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Spg021605 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021605
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:7205626..7208876
RNA-Seq ExpressionSpg021605
SyntenySpg021605
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.5e-0753.95Show/hide
Query:  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYVYRFQR
        RPRG+R SLQT KL KTVEIELP+PDTLPT AES  S+SS                YF N+V S LH +YV + Q+
Subjt:  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYVYRFQR

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]9.9e-0766Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH
        PRG+R +L T KL KTVEIELPVPDTLPTSAESS+S+SS +L      +H
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]9.0e-0855.71Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYV
        PRG+R SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SS                YF  +V S LH MYV
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYV

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.4e-0559.32Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR
        PRG+R SLQTR+L KT  IELPVPDTLPTSAESS S+SS +L      +H    Y+ Q+
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]7.3e-1042.55Show/hide
Query:  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESS
        R+N+E++  +L  R   F G        QVESEA F   R+              I +   F    PRG+R S QT KL KTVEIELPVPDTLPTSAESS
Subjt:  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESS

Query:  RSSSS----------------YFLNRVTSRLHPMYVYRFQR
         S+SS                Y  N+V S LHPMYV + Q+
Subjt:  RSSSS----------------YFLNRVTSRLHPMYVYRFQR

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein7.4e-0853.95Show/hide
Query:  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYVYRFQR
        RPRG+R SLQT KL KTVEIELP+PDTLPT AES  S+SS                YF N+V S LH +YV + Q+
Subjt:  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYVYRFQR

A0A5A7UAH6 CCHC-type domain-containing protein4.8e-0766Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH
        PRG+R +L T KL KTVEIELPVPDTLPTSAESS+S+SS +L      +H
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH

A0A5A7V2F2 Uncharacterized protein4.3e-0855.71Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYV
        PRG+R SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SS                YF  +V S LH MYV
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNRVTSRLHPMYV

A0A5D3BET3 Uncharacterized protein3.6e-1042.55Show/hide
Query:  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESS
        R+N+E++  +L  R   F G        QVESEA F   R+              I +   F    PRG+R S QT KL KTVEIELPVPDTLPTSAESS
Subjt:  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESS

Query:  RSSSS----------------YFLNRVTSRLHPMYVYRFQR
         S+SS                Y  N+V S LHPMYV + Q+
Subjt:  RSSSS----------------YFLNRVTSRLHPMYVYRFQR

A0A5D3DWP3 Uncharacterized protein6.9e-0659.32Show/hide
Query:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR
        PRG+R SLQTR+L KT  IELPVPDTLPTSAESS S+SS +L      +H    Y+ Q+
Subjt:  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGTCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAGAATTTTCGTGCAAACCAGGAGGATATCTG
GTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGAGGGTAGTAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTG
GACAAATCGGTTGGGAATATTGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCTAAACCGAGTTACGTCAAGGCTGCACCCTATGTATGTCTACAGATTCCAGAGGACGAC
CCCAACAATGCTACCGAATGGAAAAGCTAATGTTGGGAATGGCCCTAAGAAACCTTATCCACTTCTGGAGTTCGCGTTGTTCCAAATCCCATGTTACATCCCTCCGAATG
GTGTAGTAGCTCCAGGGTATACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGTCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAGAATTTTCGTGCAAACCAGGAGGATATCTG
GTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGAGGGTAGTAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTG
GACAAATCGGTTGGGAATATTGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCTAAACCGAGTTACGTCAAGGCTGCACCCTATGTATGTCTACAGATTCCAGAGGACGAC
CCCAACAATGCTACCGAATGGAAAAGCTAATGTTGGGAATGGCCCTAAGAAACCTTATCCACTTCTGGAGTTCGCGTTGTTCCAAATCCCATGTTACATCCCTCCGAATG
GTGTAGTAGCTCCAGGGTATACTTAG
Protein sequenceShow/hide protein sequence
MEESGFNLPISGFLFGLSYTGRTKRAQNFRANQEDIWFSLVFRAFWGVQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVP
DTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQRTTPTMLPNGKANVGNGPKKPYPLLEFALFQIPCYIPPNGVVAPGYT