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Spg021608 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021608
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold9:5503528..5511532
RNA-Seq ExpressionSpg021608
SyntenySpg021608
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.1e-2246.47Show/hide
Query:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYL---VSCRGFENEEFDVPRGNRSGLQTRELAKT---------------LEIELPMPDTLPTSAESS
        G +STGFSSK GG LVF        ++K NQKLYL   V     EN +  +PRGNR  LQTREL KT               + IELP+PD LPTSAESS
Subjt:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYL---VSCRGFENEEFDVPRGNRSGLQTRELAKT---------------LEIELPMPDTLPTSAESS

Query:  RTSSS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
         ++SS                 + NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT
Subjt:  RTSSS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-2045.45Show/hide
Query:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS
        TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T                 +EIELP+PDTLPTSAESS ++SS
Subjt:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS

Query:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
                        Y+ NQVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Subjt:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2149.02Show/hide
Query:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSR
        G +STGFSSK G  LVF        V K NQKLYL      E+ +   PRGN+  LQT EL KT                 +EIEL +PDTLPTSAES  
Subjt:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSR

Query:  TSSSYYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
        ++SSY+ NQVM      FNV  G    +  DDVC LH +FRAK AGG GGGVT
Subjt:  TSSSYYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.9e-2141.5Show/hide
Query:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTL---------------EIELPMPDTLPTSAESSRTS
        G +STGFSSK GG LV         ++KLNQKLYL             PRGNR  LQT EL KT+                IELP+PDTLPTSAESS ++
Subjt:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTL---------------EIELPMPDTLPTSAESSRTS

Query:  SS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTG
        SS                 + NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT    +++      I  G  R    +A S H+ G
Subjt:  SS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.9e-2045.45Show/hide
Query:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS
        TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T                 +EIELP+PDTLPTSAESS ++SS
Subjt:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS

Query:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
                        Y+ NQVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Subjt:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.4e-2045.45Show/hide
Query:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS
        TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T                 +EIELP+PDTLPTSAESS ++SS
Subjt:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS

Query:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
                        Y+ NQVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Subjt:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein9.9e-2249.02Show/hide
Query:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSR
        G +STGFSSK G  LVF        V K NQKLYL      E+ +   PRGN+  LQT EL KT                 +EIEL +PDTLPTSAES  
Subjt:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSR

Query:  TSSSYYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
        ++SSY+ NQVM      FNV  G    +  DDVC LH +FRAK AGG GGGVT
Subjt:  TSSSYYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

A0A5D3C0X3 Retrotrans_gag domain-containing protein3.2e-2032.56Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------LEIELPVPDTLPTSAES-SRTSSSTWVGLYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS +LY TVCT                  +EIELPVPDTLPTSAES ++T    W  +    +    V FNV  G    +  DDV WLHA+FRAK+
Subjt:  MTEILSPRLYGTVCTQ-----------------LEIELPVPDTLPTSAES-SRTSSSTWVGLYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGEHLRERVKEEEEEQFRGFESTGFSSKAGGSLVFLWCFEHSG----------------VYKLNQKLYLVSCRGFENE------EFDVPRGNRSGL
        AG P G     + ++E ++  +G    G S+  G +      F  S                 +Y + ++L  +    FE+       E  V    +S +
Subjt:  AGGPGGEHLRERVKEEEEEQFRGFESTGFSSKAGGSLVFLWCFEHSG----------------VYKLNQKLYLVSCRGFENE------EFDVPRGNRSGL

Query:  QTRELAKTLEIEL----------------PMPDTLPTSAESSRTSSSY---YPNQVMFNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDT
             A+TL+ +                    D      + S +   Y   Y     FNV  G    +  DDVCWLHA+FRAK AGG G GVT  LVF  
Subjt:  QTRELAKTLEIEL----------------PMPDTLPTSAESSRTSSSY---YPNQVMFNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDT

Query:  D
        D
Subjt:  D

A0A5D3CJX3 CCHC-type domain-containing protein2.9e-2141.5Show/hide
Query:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTL---------------EIELPMPDTLPTSAESSRTS
        G +STGFSSK GG LV         ++KLNQKLYL             PRGNR  LQT EL KT+                IELP+PDTLPTSAESS ++
Subjt:  GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTL---------------EIELPMPDTLPTSAESSRTS

Query:  SS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTG
        SS                 + NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT    +++      I  G  R    +A S H+ G
Subjt:  SS----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTG

A0A5D3DSY7 Putative Retrotransposon protein1.4e-2045.45Show/hide
Query:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS
        TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T                 +EIELP+PDTLPTSAESS ++SS
Subjt:  TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT-----------------LEIELPMPDTLPTSAESSRTSSS

Query:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT
                        Y+ NQVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Subjt:  ----------------YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGTTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAACAATTTCGTGGTTTTGAGAGCACAGGA
TTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGGGTTTGAAAA
TGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTTTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCCAGAACAAGCTCCAGTTATTACCCGAACCAAGTTATGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATC
TTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGT
ATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGTTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAACAATTTCGTGGTTTTGAGAGCACAGGA
TTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGGGTTTGAAAA
TGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTTTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCCAGAACAAGCTCCAGTTATTACCCGAACCAAGTTATGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATC
TTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGT
ATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQLEIELPVPDTLPTSAESSRTSSSTWVGLYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGEHLRERVKEEEEEQFRGFESTG
FSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTLEIELPMPDTLPTSAESSRTSSSYYPNQVMFNVQEGQRVSLEEDDVCWLHAI
FRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTGPRNSNH