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Spg021613 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021613
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold2:17849787..17851020
RNA-Seq ExpressionSpg021613
SyntenySpg021613
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.3e-2836.25Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI----------DADGDMAPDYMDWYENITRRFITREGASYGQ
        W+DQFCVT  ATHV+ QYRYMFDLL+ D    EP                      SP+            D D+  +Y+ WY NITR +ITR  A+ G 
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI----------DADGDMAPDYMDWYENITRRFITREGASYGQ

Query:  ARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPSTPVMTIP---------
         RS   R+RD+++D  Q+LN+CN+    ME++H MY++ I PPP  R R RV+E       +E +HNVE++PP TQTQ   G  +P+  +P         
Subjt:  ARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPSTPVMTIP---------

Query:  ------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVYPTELVEEPR
                    PS    + GPS+   H   RG GEH +Y+     +   R
Subjt:  ------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVYPTELVEEPR

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.9e-2738.53Show/hide
Query:  DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRR-RRVQEHFPPVVPEEFHHNVEDM
        D D+  +Y+ WY NITR +ITR GA+ G++ +   R+RD+++D+ Q L++CN+ +  ME++H MY++PI PPP  R   RV+E       ++ +HNVE++
Subjt:  DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRR-RRVQEHFPPVVPEEFHHNVEDM

Query:  PPFTQTQDGAG---PSTPVMTIPPSWHDYEAG------------------PSSSSAHERGRGRGEHAQYVY---------PTELVEEPREEEDPDDQVPR
        P  TQTQ   G   P T + T    + D+E G                  PS+S  H   RG GEH +Y+Y           E  +EP  +ED +    +
Subjt:  PPFTQTQDGAG---PSTPVMTIPPSWHDYEAG------------------PSSSSAHERGRGRGEHAQYVY---------PTELVEEPREEEDPDDQVPR

Query:  ARRRQPARNRRRPPCGTH
        +RRRQP RNRRRP CGTH
Subjt:  ARRRQPARNRRRPPCGTH

TYK14590.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]6.1e-3233.03Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKP-------------DLEP--------------------------------SSPIDA-DGDMAPDYMDWYENITR
        WRDQFCVT SATHV+ QYRYMFDLL+P             + EP                                  PI+  D D+  +Y+ WY+NI++
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKP-------------DLEP--------------------------------SSPIDA-DGDMAPDYMDWYENITR

Query:  RFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPS--TPV
         +IT+ GA+    RS   R+R++++D+ Q+LN+CN  +  ME +HYMY++PI   P  +RR + +   P   EE   + E++PP TQTQ  +  S   PV
Subjt:  RFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPS--TPV

Query:  MTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY-------PTELVEEPREEEDPDDQVP------
        M +P                                    ++D  + PSSS  H+ GRGRGEH +Y+Y       P +  E+   E+  +  VP      
Subjt:  MTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY-------PTELVEEPREEEDPDDQVP------

Query:  --------------RARRRQPARNRRRPPCGTH
                      ++RRRQPARNRRRP CGTH
Subjt:  --------------RARRRQPARNRRRPPCGTH

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]4.7e-3235.03Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI-----------------------------------DADGDM
        WRDQFCV  SAT+V+ QYRYMFDLL+ D    EP                      SP+                                     D D+
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI-----------------------------------DADGDM

Query:  APDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFT
          +Y+  Y NITR +ITR GA  G  RS   R+RD+  D  Q+L++CN+ +  ME++H +Y++PI PPP  R R RV+E       +E +HNVE++PP T
Subjt:  APDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFT

Query:  QTQDGAGPSTPVMTIPPSWHDY---------------------EAGPSSSSAHERGRGRGEHAQYVY---PT------ELVEEPREEEDPDDQVPRARRR
        QTQ   G  +P+  +P     Y                     + GPS+S  +  GRG GEH +Y+Y   PT      E  +EP+ +ED +    ++RRR
Subjt:  QTQDGAGPSTPVMTIPPSWHDY---------------------EAGPSSSSAHERGRGRGEHAQYVY---PT------ELVEEPREEEDPDDQVPRARRR

Query:  QPARNRRRPPCGTH
        QPARNR+   CGTH
Subjt:  QPARNRRRPPCGTH

TYK27427.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.8e-2830.29Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKP------------------------------------------DLEPSSPIDA---------------------
        WRDQFCVT SATHV+ QYRYMFDLL+P                                          DL  +  +D                      
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKP------------------------------------------DLEPSSPIDA---------------------

Query:  ---DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVE
           D D+  +Y+ WY+NI++ +IT+ GA+    RS   R+R++++D  Q+LN+CN  +  ME +HYMY++PI P P  RRR + +    +  EE   + E
Subjt:  ---DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVE

Query:  DMPPFTQTQDGAGPS--TPVMTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY------------
        ++PP TQTQ  +  +  +PVM +P                                    ++D  + PSSS  H  GRGRGEH +Y+Y            
Subjt:  DMPPFTQTQDGAGPS--TPVMTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY------------

Query:  ----------PTELVEEPREE--EDPDDQVPRARRRQPARNRRRPPCGTH
                  P +  E+ ++E  E+   Q  + RRRQ A+NR+RP CGTH
Subjt:  ----------PTELVEEPREE--EDPDDQVPRARRRQPARNRRRPPCGTH

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.6e-2836.25Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI----------DADGDMAPDYMDWYENITRRFITREGASYGQ
        W+DQFCVT  ATHV+ QYRYMFDLL+ D    EP                      SP+            D D+  +Y+ WY NITR +ITR  A+ G 
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI----------DADGDMAPDYMDWYENITRRFITREGASYGQ

Query:  ARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPSTPVMTIP---------
         RS   R+RD+++D  Q+LN+CN+    ME++H MY++ I PPP  R R RV+E       +E +HNVE++PP TQTQ   G  +P+  +P         
Subjt:  ARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPSTPVMTIP---------

Query:  ------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVYPTELVEEPR
                    PS    + GPS+   H   RG GEH +Y+     +   R
Subjt:  ------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVYPTELVEEPR

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.9e-2738.53Show/hide
Query:  DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRR-RRVQEHFPPVVPEEFHHNVEDM
        D D+  +Y+ WY NITR +ITR GA+ G++ +   R+RD+++D+ Q L++CN+ +  ME++H MY++PI PPP  R   RV+E       ++ +HNVE++
Subjt:  DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRR-RRVQEHFPPVVPEEFHHNVEDM

Query:  PPFTQTQDGAG---PSTPVMTIPPSWHDYEAG------------------PSSSSAHERGRGRGEHAQYVY---------PTELVEEPREEEDPDDQVPR
        P  TQTQ   G   P T + T    + D+E G                  PS+S  H   RG GEH +Y+Y           E  +EP  +ED +    +
Subjt:  PPFTQTQDGAG---PSTPVMTIPPSWHDYEAG------------------PSSSSAHERGRGRGEHAQYVY---------PTELVEEPREEEDPDDQVPR

Query:  ARRRQPARNRRRPPCGTH
        +RRRQP RNRRRP CGTH
Subjt:  ARRRQPARNRRRPPCGTH

A0A5D3CT32 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.0e-3233.03Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKP-------------DLEP--------------------------------SSPIDA-DGDMAPDYMDWYENITR
        WRDQFCVT SATHV+ QYRYMFDLL+P             + EP                                  PI+  D D+  +Y+ WY+NI++
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKP-------------DLEP--------------------------------SSPIDA-DGDMAPDYMDWYENITR

Query:  RFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPS--TPV
         +IT+ GA+    RS   R+R++++D+ Q+LN+CN  +  ME +HYMY++PI   P  +RR + +   P   EE   + E++PP TQTQ  +  S   PV
Subjt:  RFITREGASYGQARSCFRRIRDLSEDM-QILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPS--TPV

Query:  MTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY-------PTELVEEPREEEDPDDQVP------
        M +P                                    ++D  + PSSS  H+ GRGRGEH +Y+Y       P +  E+   E+  +  VP      
Subjt:  MTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY-------PTELVEEPREEEDPDDQVP------

Query:  --------------RARRRQPARNRRRPPCGTH
                      ++RRRQPARNRRRP CGTH
Subjt:  --------------RARRRQPARNRRRPPCGTH

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein2.3e-3235.03Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI-----------------------------------DADGDM
        WRDQFCV  SAT+V+ QYRYMFDLL+ D    EP                      SP+                                     D D+
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKPD---LEP---------------------SSPI-----------------------------------DADGDM

Query:  APDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFT
          +Y+  Y NITR +ITR GA  G  RS   R+RD+  D  Q+L++CN+ +  ME++H +Y++PI PPP  R R RV+E       +E +HNVE++PP T
Subjt:  APDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRR-RVQEHFPPVVPEEFHHNVEDMPPFT

Query:  QTQDGAGPSTPVMTIPPSWHDY---------------------EAGPSSSSAHERGRGRGEHAQYVY---PT------ELVEEPREEEDPDDQVPRARRR
        QTQ   G  +P+  +P     Y                     + GPS+S  +  GRG GEH +Y+Y   PT      E  +EP+ +ED +    ++RRR
Subjt:  QTQDGAGPSTPVMTIPPSWHDY---------------------EAGPSSSSAHERGRGRGEHAQYVY---PT------ELVEEPREEEDPDDQVPRARRR

Query:  QPARNRRRPPCGTH
        QPARNR+   CGTH
Subjt:  QPARNRRRPPCGTH

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X18.9e-2930.29Show/hide
Query:  WRDQFCVTGSATHVLIQYRYMFDLLKP------------------------------------------DLEPSSPIDA---------------------
        WRDQFCVT SATHV+ QYRYMFDLL+P                                          DL  +  +D                      
Subjt:  WRDQFCVTGSATHVLIQYRYMFDLLKP------------------------------------------DLEPSSPIDA---------------------

Query:  ---DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVE
           D D+  +Y+ WY+NI++ +IT+ GA+    RS   R+R++++D  Q+LN+CN  +  ME +HYMY++PI P P  RRR + +    +  EE   + E
Subjt:  ---DGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSED-MQILNLCNSGDANMEQLHYMYNIPIAPPPGPRRRRVQEHFPPVVPEEFHHNVE

Query:  DMPPFTQTQDGAGPS--TPVMTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY------------
        ++PP TQTQ  +  +  +PVM +P                                    ++D  + PSSS  H  GRGRGEH +Y+Y            
Subjt:  DMPPFTQTQDGAGPS--TPVMTIP----------------------------------PSWHDYEAGPSSSSAHERGRGRGEHAQYVY------------

Query:  ----------PTELVEEPREE--EDPDDQVPRARRRQPARNRRRPPCGTH
                  P +  E+ ++E  E+   Q  + RRRQ A+NR+RP CGTH
Subjt:  ----------PTELVEEPREE--EDPDDQVPRARRRQPARNRRRPPCGTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAGAGACCAATTTTGTGTGACTGGATCAGCTACACATGTATTGATCCAGTATAGATACATGTTTGACCTTCTAAAACCTGATCTGGAACCAAGTTCTCCAATAGATGC
TGATGGAGATATGGCTCCCGACTACATGGACTGGTATGAGAATATTACTAGACGATTCATCACTCGCGAGGGAGCCTCATATGGTCAAGCGAGGTCATGCTTCAGACGCA
TCCGTGATCTCTCTGAGGATATGCAGATCTTAAATTTGTGCAACAGTGGTGATGCCAATATGGAGCAGCTCCATTATATGTACAACATACCTATTGCACCTCCTCCTGGA
CCTAGGCGTAGAAGAGTCCAGGAGCATTTCCCACCAGTTGTACCAGAAGAATTTCACCACAATGTTGAAGACATGCCTCCTTTTACTCAGACGCAGGATGGTGCTGGTCC
GTCCACTCCAGTGATGACTATTCCACCATCATGGCATGATTATGAGGCTGGTCCTTCATCGTCATCTGCTCACGAACGTGGACGTGGACGTGGAGAGCATGCACAATATG
TATACCCTACAGAGCTTGTAGAGGAACCCAGGGAAGAGGAGGATCCAGATGATCAGGTACCGAGGGCTCGTCGTCGGCAACCAGCTCGTAATCGGCGACGTCCGCCTTGT
GGCACACATTAG
mRNA sequenceShow/hide mRNA sequence
TGGAGAGACCAATTTTGTGTGACTGGATCAGCTACACATGTATTGATCCAGTATAGATACATGTTTGACCTTCTAAAACCTGATCTGGAACCAAGTTCTCCAATAGATGC
TGATGGAGATATGGCTCCCGACTACATGGACTGGTATGAGAATATTACTAGACGATTCATCACTCGCGAGGGAGCCTCATATGGTCAAGCGAGGTCATGCTTCAGACGCA
TCCGTGATCTCTCTGAGGATATGCAGATCTTAAATTTGTGCAACAGTGGTGATGCCAATATGGAGCAGCTCCATTATATGTACAACATACCTATTGCACCTCCTCCTGGA
CCTAGGCGTAGAAGAGTCCAGGAGCATTTCCCACCAGTTGTACCAGAAGAATTTCACCACAATGTTGAAGACATGCCTCCTTTTACTCAGACGCAGGATGGTGCTGGTCC
GTCCACTCCAGTGATGACTATTCCACCATCATGGCATGATTATGAGGCTGGTCCTTCATCGTCATCTGCTCACGAACGTGGACGTGGACGTGGAGAGCATGCACAATATG
TATACCCTACAGAGCTTGTAGAGGAACCCAGGGAAGAGGAGGATCCAGATGATCAGGTACCGAGGGCTCGTCGTCGGCAACCAGCTCGTAATCGGCGACGTCCGCCTTGT
GGCACACATTAG
Protein sequenceShow/hide protein sequence
WRDQFCVTGSATHVLIQYRYMFDLLKPDLEPSSPIDADGDMAPDYMDWYENITRRFITREGASYGQARSCFRRIRDLSEDMQILNLCNSGDANMEQLHYMYNIPIAPPPG
PRRRRVQEHFPPVVPEEFHHNVEDMPPFTQTQDGAGPSTPVMTIPPSWHDYEAGPSSSSAHERGRGRGEHAQYVYPTELVEEPREEEDPDDQVPRARRRQPARNRRRPPC
GTH