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Spg021651 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021651
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger CCCH domain-containing protein 16
Genome locationscaffold2:17408580..17415010
RNA-Seq ExpressionSpg021651
SyntenySpg021651
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR045072 - MKRN-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443667.1 PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis melo]6.3e-2681.94Show/hide
Query:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        S+    KPFENKWTR STPTGNA  RK DN LPS+NHKCTDGESCKRQIAEDFQNERPLWKLTCYGH+KN+P
Subjt:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
XP_008443668.1 PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis melo]6.3e-2681.94Show/hide
Query:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        S+    KPFENKWTR STPTGNA  RK DN LPS+NHKCTDGESCKRQIAEDFQNERPLWKLTCYGH+KN+P
Subjt:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
XP_011660211.1 zinc finger CCCH domain-containing protein 16 [Cucumis sativus]8.2e-2681.94Show/hide
Query:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        S+    KPFENKWTR STPTGNA  RK DN LPS+NHKCTDGESCKRQIAEDFQNERPLWKLTCYGH+KN+P
Subjt:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
XP_022144416.1 zinc finger CCCH domain-containing protein 16 [Momordica charantia]5.3e-2561.39Show/hide
Query:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQ
        +S++ + + + F   +  T    +     S+    KPFENKWTRSSTP+GNAP +KSDNQ PSANHKCTDGESCK QI EDFQNERPLWKLTCYGHSK++
Subjt:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQ

Query:  P
        P
Subjt:  P
XP_022154304.1 zinc finger CCCH domain-containing protein 16-like [Momordica charantia]7.6e-2462.24Show/hide
Query:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSK
        +S++ + + + F   +  T    +     S+    KPFENKWTRSSTP+GNAP +KSDNQ PSANHKCTDGESCK QI EDFQNERPLWKLTCYGHSK
Subjt:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSK
TrEMBL top hitse value%identityAlignment
A0A1S3B837 zinc finger CCCH domain-containing protein 16 isoform X23.0e-2681.94Show/hide
Query:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        S+    KPFENKWTR STPTGNA  RK DN LPS+NHKCTDGESCKRQIAEDFQNERPLWKLTCYGH+KN+P
Subjt:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
A0A1S3B9C9 zinc finger CCCH domain-containing protein 16 isoform X13.0e-2681.94Show/hide
Query:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        S+    KPFENKWTR STPTGNA  RK DN LPS+NHKCTDGESCKRQIAEDFQNERPLWKLTCYGH+KN+P
Subjt:  SQLGSLKPFENKWTRSSTPTGNA-PRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
A0A6J1CTC5 zinc finger CCCH domain-containing protein 162.6e-2561.39Show/hide
Query:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQ
        +S++ + + + F   +  T    +     S+    KPFENKWTRSSTP+GNAP +KSDNQ PSANHKCTDGESCK QI EDFQNERPLWKLTCYGHSK++
Subjt:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQ

Query:  P
        P
Subjt:  P
A0A6J1DLN7 zinc finger CCCH domain-containing protein 16-like3.7e-2462.24Show/hide
Query:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSK
        +S++ + + + F   +  T    +     S+    KPFENKWTRSSTP+GNAP +KSDNQ PSANHKCTDGESCK QI EDFQNERPLWKLTCYGHSK
Subjt:  SSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSK
A0A6J1EHE7 zinc finger CCCH domain-containing protein 16 isoform X13.7e-2460Show/hide
Query:  SSTSSSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGH
        S   +S++++ + + F   +  T    +   S S+    K ++NKWTRSSTPTGNAP RK DNQ  SANH CTDGESCKRQIAEDFQNERPLWKLTCYGH
Subjt:  SSTSSSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAP-RKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGH

Query:  SKNQP
        SK+QP
Subjt:  SKNQP
SwissProt top hitse value%identityAlignment
Q5Z807 Zinc finger CCCH domain-containing protein 461.1e-1249.28Show/hide
Query:  GSLKPFENKWTRS-STPTGNAPRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        G  KPF+NKW R  S PT         Q  +A+  C D +SC++QI+EDF+NE P+WKLTCY H +N P
Subjt:  GSLKPFENKWTRS-STPTGNAPRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
Q9FWS3 Zinc finger CCCH domain-containing protein 168.2e-1350.67Show/hide
Query:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        GS +P  F+N W+R +STPTG     + +++  Q   A+HKCTD  +CKR + +DF+NERP+WKLTCYGH K  P
Subjt:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
Arabidopsis top hitse value%identityAlignment
AT1G75340.1 Zinc finger C-x8-C-x5-C-x3-H type family protein5.9e-1450.67Show/hide
Query:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        GS +P  F+N W+R +STPTG     + +++  Q   A+HKCTD  +CKR + +DF+NERP+WKLTCYGH K  P
Subjt:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
AT1G75340.2 Zinc finger C-x8-C-x5-C-x3-H type family protein5.9e-1450.67Show/hide
Query:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP
        GS +P  F+N W+R +STPTG     + +++  Q   A+HKCTD  +CKR + +DF+NERP+WKLTCYGH K  P
Subjt:  GSLKP--FENKWTR-SSTPTGN----APRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSKNQP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTTTGTCCAAGGTTGGATCTTCCTCCACATCTTCTTCTACAAAAAGAGAACCTAGGTCTTCTACCTTTGCTTCTGTGATCGGTCCCACCTCAAGTCTTTCTAG
TATTTGCAAATCTTATTCTCAACTCGGTTCACTGAAACCATTTGAAAACAAGTGGACCCGTTCTTCCACGCCTACTGGAAATGCTCCTCGAAAATCAGACAATCAGCTCC
CATCAGCTAATCACAAATGCACAGATGGGGAATCTTGCAAGCGCCAAATCGCTGAAGATTTTCAAAATGAGAGGCCATTATGGAAACTGACATGCTATGGCCACAGTAAA
AACCAGCCGAACATCAATCTCAACATTGGACAAAGGAAACCTTTCAGCTTTTGCATCAAGAAATTCAAGTTCCGAGAGCTTGAATTTCTTGATAACTATGGCTTGCTTTT
CTTCAAAGAGCTAGAGGAAATGGTAAAATTGGCTACTTATTTGGATATTTTGTTTGATTTCAGAACAGATGTTACATCATCAGAAAGATCTGGAATGTGGCCTTTCTCCT
ACTTGGATATGCCACTGGGCCGAAGACCAGATGGTGCTGAATTTTGGGACCTTATTGAAGACCCTTCAAATAGATTGGCTAAGTGGAAAATCCTCACATACTCTAATGGA
GACTGCGAGGAGGCTGGAAAGGTTAATGAGAGATTTCCTTCTGGAGAGGCACTAGAAGCAATATCTAATCTGATTAGTAGGGAGGTATCCACCCTGCCCATTTCCAAAGG
CGGTTTAGATGCTGCGAACCTTCAAGCTAGAAATATGGCCCTTCTCGCCAAATGGGATGATGCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTTTGTCCAAGGTTGGATCTTCCTCCACATCTTCTTCTACAAAAAGAGAACCTAGGTCTTCTACCTTTGCTTCTGTGATCGGTCCCACCTCAAGTCTTTCTAG
TATTTGCAAATCTTATTCTCAACTCGGTTCACTGAAACCATTTGAAAACAAGTGGACCCGTTCTTCCACGCCTACTGGAAATGCTCCTCGAAAATCAGACAATCAGCTCC
CATCAGCTAATCACAAATGCACAGATGGGGAATCTTGCAAGCGCCAAATCGCTGAAGATTTTCAAAATGAGAGGCCATTATGGAAACTGACATGCTATGGCCACAGTAAA
AACCAGCCGAACATCAATCTCAACATTGGACAAAGGAAACCTTTCAGCTTTTGCATCAAGAAATTCAAGTTCCGAGAGCTTGAATTTCTTGATAACTATGGCTTGCTTTT
CTTCAAAGAGCTAGAGGAAATGGTAAAATTGGCTACTTATTTGGATATTTTGTTTGATTTCAGAACAGATGTTACATCATCAGAAAGATCTGGAATGTGGCCTTTCTCCT
ACTTGGATATGCCACTGGGCCGAAGACCAGATGGTGCTGAATTTTGGGACCTTATTGAAGACCCTTCAAATAGATTGGCTAAGTGGAAAATCCTCACATACTCTAATGGA
GACTGCGAGGAGGCTGGAAAGGTTAATGAGAGATTTCCTTCTGGAGAGGCACTAGAAGCAATATCTAATCTGATTAGTAGGGAGGTATCCACCCTGCCCATTTCCAAAGG
CGGTTTAGATGCTGCGAACCTTCAAGCTAGAAATATGGCCCTTCTCGCCAAATGGGATGATGCTTCATGA
Protein sequenceShow/hide protein sequence
MFSLSKVGSSSTSSSTKREPRSSTFASVIGPTSSLSSICKSYSQLGSLKPFENKWTRSSTPTGNAPRKSDNQLPSANHKCTDGESCKRQIAEDFQNERPLWKLTCYGHSK
NQPNINLNIGQRKPFSFCIKKFKFRELEFLDNYGLLFFKELEEMVKLATYLDILFDFRTDVTSSERSGMWPFSYLDMPLGRRPDGAEFWDLIEDPSNRLAKWKILTYSNG
DCEEAGKVNERFPSGEALEAISNLISREVSTLPISKGGLDAANLQARNMALLAKWDDAS