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Spg021652 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021652
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold2:16790716..16793517
RNA-Seq ExpressionSpg021652
SyntenySpg021652
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]5.8e-0765.12Show/hide
Query:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRPSLKA
        GES    DSI L   GQDR+GSWEHN+TRWN L+P FRP L+A
Subjt:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRPSLKA

KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0677.42Show/hide
Query:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS
        + L  WGQD+VGSWEHNH RWNSLIPDFR S
Subjt:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]8.2e-0949.25Show/hide
Query:  ESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRP-------SLKAFSLFESSLVGNFGNFGEH
        ES   ADS+ L  WGQDRV SWEHNHTRWNSL+P FR         +K F +  +  +G F   G H
Subjt:  ESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRP-------SLKAFSLFESSLVGNFGNFGEH

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]9.0e-0876.32Show/hide
Query:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFR
        GES    DSI L  WGQDRVGSWEHNHTRWNS IP FR
Subjt:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFR

TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]6.5e-0677.42Show/hide
Query:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS
        + L  WGQD+VGSWEHNH RWNSLIPDFR S
Subjt:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS

TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein3.1e-0677.42Show/hide
Query:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS
        + L  WGQD+VGSWEHNH RWNSLIPDFR S
Subjt:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS

A0A5A7SPG1 Pol protein2.8e-0765.12Show/hide
Query:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRPSLKA
        GES    DSI L   GQDR+GSWEHN+TRWN L+P FRP L+A
Subjt:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRPSLKA

A0A5A7U2P4 Integrase catalytic domain-containing protein3.9e-0949.25Show/hide
Query:  ESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRP-------SLKAFSLFESSLVGNFGNFGEH
        ES   ADS+ L  WGQDRV SWEHNHTRWNSL+P FR         +K F +  +  +G F   G H
Subjt:  ESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRP-------SLKAFSLFESSLVGNFGNFGEH

A0A5D3C3J6 Gag/pol protein4.4e-0876.32Show/hide
Query:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFR
        GES    DSI L  WGQDRVGSWEHNHTRWNS IP FR
Subjt:  GESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFR

A0A5D3E3M6 Uncharacterized protein3.1e-0677.42Show/hide
Query:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS
        + L  WGQD+VGSWEHNH RWNSLIPDFR S
Subjt:  ISLPLWGQDRVGSWEHNHTRWNSLIPDFRPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGACCTGCACGCTGATTCAATAAGCCTACCATTGTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCATTCCTGA
CTTTAGGCCTTCTCTCAAGGCTTTTAGCCTTTTTGAGAGTTCTTTAGTGGGAAATTTTGGGAATTTTGGGGAGCACTCTAGGAGGCTCAAGGTGTCTCTAGGACTTGAAC
AAAGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTAGACCTCAAACAGGTCCATTAGGTCCCATCGATACCGTTAGAGCCATCGTCGAAACCACT
GTCGGAGCCATTGTCGGAGCTGCCACCATTCGTCGTCGAAGCCACAACTGGAATTACGTTCTGAAACCTGCAAATCTGAAAGCAATGGGAGCCCACGACAGTTGCGAAAC
CTCGATCTTCTCCTTCTCTGGCGATGCGAACCTAGGACGAAACAAATCCAGATCTGAAAAACTTGCGCAACCTAGATATGGAAACGACGATGCGAGCGGACGGCAGTTGC
AAACCCACAGTCTTCTCTGTCTTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGACCTGCACGCTGATTCAATAAGCCTACCATTGTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCATTCCTGA
CTTTAGGCCTTCTCTCAAGGCTTTTAGCCTTTTTGAGAGTTCTTTAGTGGGAAATTTTGGGAATTTTGGGGAGCACTCTAGGAGGCTCAAGGTGTCTCTAGGACTTGAAC
AAAGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTAGACCTCAAACAGGTCCATTAGGTCCCATCGATACCGTTAGAGCCATCGTCGAAACCACT
GTCGGAGCCATTGTCGGAGCTGCCACCATTCGTCGTCGAAGCCACAACTGGAATTACGTTCTGAAACCTGCAAATCTGAAAGCAATGGGAGCCCACGACAGTTGCGAAAC
CTCGATCTTCTCCTTCTCTGGCGATGCGAACCTAGGACGAAACAAATCCAGATCTGAAAAACTTGCGCAACCTAGATATGGAAACGACGATGCGAGCGGACGGCAGTTGC
AAACCCACAGTCTTCTCTGTCTTCGGTGA
Protein sequenceShow/hide protein sequence
MGESDLHADSISLPLWGQDRVGSWEHNHTRWNSLIPDFRPSLKAFSLFESSLVGNFGNFGEHSRRLKVSLGLEQRALPSLWHERDFCLLVRPQTGPLGPIDTVRAIVETT
VGAIVGAATIRRRSHNWNYVLKPANLKAMGAHDSCETSIFSFSGDANLGRNKSRSEKLAQPRYGNDDASGRQLQTHSLLCLR