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Spg021659 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021659
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionChorein_N domain-containing protein
Genome locationscaffold2:17329475..17340407
RNA-Seq ExpressionSpg021659
SyntenySpg021659
Gene Ontology termsNA
InterPro domainsIPR026854 - Vacuolar protein sorting-associated protein 13-like, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023774.1 VPS13, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1292.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
XP_022149963.1 uncharacterized protein LOC111018256 isoform X1 [Momordica charantia]1.5e-1292.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
XP_022149964.1 uncharacterized protein LOC111018256 isoform X2 [Momordica charantia]1.5e-1292.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
XP_022960657.1 uncharacterized protein LOC111461381 isoform X1 [Cucurbita moschata]1.5e-1292.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
XP_022988633.1 uncharacterized protein LOC111485823 isoform X1 [Cucurbita maxima]1.5e-1292.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
TrEMBL top hitse value%identityAlignment
A0A0A0M352 Chorein_N domain-containing protein1.6e-1288.37Show/hide
Query:  MVGRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        M GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDD E S+
Subjt:  MVGRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
A0A6J1D861 uncharacterized protein LOC111018256 isoform X17.2e-1392.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X27.2e-1392.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
A0A6J1H814 uncharacterized protein LOC111461381 isoform X17.2e-1392.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
A0A6J1JMV4 uncharacterized protein LOC111485823 isoform X17.2e-1392.68Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVGRLSIKIPWKKLGWDPIIIILEDIY+SASQRDDEE S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48090.1 calcium-dependent lipid-binding family protein6.0e-0437.84Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDE
        G VG +++K+PWK LG +P+I++++ ++V A    D+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDE
AT5G24740.1 Protein of unknown function (DUF1162)2.5e-1063.41Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVG+LSIKIPWKKL  DP+ I++ED+++ ASQR+D+E S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
AT5G24740.2 Protein of unknown function (DUF1162)2.5e-1063.41Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA
        GRVG+LSIKIPWKKL  DP+ I++ED+++ ASQR+D+E S+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYVSASQRDDEELSA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGGGTCAGCCTAGTCCGACGAAACTTTTGCAAATCCATTGTCTTGATATGGTGCTCATCCAAGAAACTTTTGCAGCTAGCAGACTTCATTTTCGTGAAATTCC
ACCTTCCATATATGAGATTCCTTTGACGCAGTTTCCTTTGGTGGTGAAGTTTTTTCGAATATTCCTTTTCAGTTGGTCTCTTCAGTCGTTTGGTGGTTTTGATCTTTTCT
TATATTTTGATCGATTTGCTGGTTTATTTTCTATATTTGCTATGGTAGGTCGTGTTGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCAATCATT
ATCATTTTGGAGGATATATATGTTTCTGCGTCTCAACGGGATGATGAAGAGTTATCCGCTTGCTTCTTTCTTCTTCTTCCTCTGCTTCGTCTTCGTTCGGAATGGCATGG
ATCTCCACGACCAGGATACATGATATTTTTCGATTCAAAATACGAGCTGAATCGTTTTGCTTCAGTTTCGGTCCGAATCGTACGATACGTATCGCGTATCTGTTTGTTCA
ACTATGGTTGGGTTGGGCAGGAACTTCAGGTCCTTAGAGAGATGATTGAGGAGTTCCTCCTCCATCCACCATTTAGAGATGAGGGGAGGGTGTTATGGCTTGTTGGGTGC
ATTGAGATTCATGATTGTGCTAGATTTGGACGCCTCATAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGGGTCAGCCTAGTCCGACGAAACTTTTGCAAATCCATTGTCTTGATATGGTGCTCATCCAAGAAACTTTTGCAGCTAGCAGACTTCATTTTCGTGAAATTCC
ACCTTCCATATATGAGATTCCTTTGACGCAGTTTCCTTTGGTGGTGAAGTTTTTTCGAATATTCCTTTTCAGTTGGTCTCTTCAGTCGTTTGGTGGTTTTGATCTTTTCT
TATATTTTGATCGATTTGCTGGTTTATTTTCTATATTTGCTATGGTAGGTCGTGTTGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCAATCATT
ATCATTTTGGAGGATATATATGTTTCTGCGTCTCAACGGGATGATGAAGAGTTATCCGCTTGCTTCTTTCTTCTTCTTCCTCTGCTTCGTCTTCGTTCGGAATGGCATGG
ATCTCCACGACCAGGATACATGATATTTTTCGATTCAAAATACGAGCTGAATCGTTTTGCTTCAGTTTCGGTCCGAATCGTACGATACGTATCGCGTATCTGTTTGTTCA
ACTATGGTTGGGTTGGGCAGGAACTTCAGGTCCTTAGAGAGATGATTGAGGAGTTCCTCCTCCATCCACCATTTAGAGATGAGGGGAGGGTGTTATGGCTTGTTGGGTGC
ATTGAGATTCATGATTGTGCTAGATTTGGACGCCTCATAACTTGA
Protein sequenceShow/hide protein sequence
MDKGQPSPTKLLQIHCLDMVLIQETFAASRLHFREIPPSIYEIPLTQFPLVVKFFRIFLFSWSLQSFGGFDLFLYFDRFAGLFSIFAMVGRVGRLSIKIPWKKLGWDPII
IILEDIYVSASQRDDEELSACFFLLLPLLRLRSEWHGSPRPGYMIFFDSKYELNRFASVSVRIVRYVSRICLFNYGWVGQELQVLREMIEEFLLHPPFRDEGRVLWLVGC
IEIHDCARFGRLIT