CuGenDBv2

Gene ID	Spg021671
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zinc finger CCCH domain-containing protein 16
Genome location	scaffold2:17415068..17416144
RNA-Seq Expression	Spg021671
Synteny	Spg021671
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0005488 - binding (molecular function)
InterPro domains	IPR045072 - MKRN-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588269.1 Zinc finger CCCH domain-containing protein 16, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

XP_022144416.1 zinc finger CCCH domain-containing protein 16 [Momordica charantia]

1.8e-08

66.67

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  E CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

XP_022925231.1 zinc finger CCCH domain-containing protein 16 isoform X1 [Cucurbita moschata]

4.1e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

XP_022925263.1 zinc finger CCCH domain-containing protein 16 isoform X2 [Cucurbita moschata]

4.1e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

XP_023005674.1 zinc finger CCCH domain-containing protein 16 isoform X1 [Cucurbita maxima]

4.1e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CTC5 zinc finger CCCH domain-containing protein 16

8.8e-09

66.67

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  E CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

A0A6J1EEP6 zinc finger CCCH domain-containing protein 16 isoform X2

2.0e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

A0A6J1EHE7 zinc finger CCCH domain-containing protein 16 isoform X1

2.0e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

A0A6J1KZY0 zinc finger CCCH domain-containing protein 16 isoform X1

2.0e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

A0A6J1L2U5 zinc finger CCCH domain-containing protein 16 isoform X2

2.0e-08

64.91

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Query:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        FQN+  L+ L C+G      S  + CDIVGDVSYEELRA+AYDEAKRGISLQSIV +
Subjt:  FQNQH-LFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

SwissProt top hits

e value

%identity

Alignment

Q5Z807 Zinc finger CCCH domain-containing protein 46

2.8e-04

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Query:  CDIVGDVSYEELRAVAYDEAKRGISLQSIV
        C+I GD+S+EELRA AY+E K+G SLQSIV
Subjt:  CDIVGDVSYEELRAVAYDEAKRGISLQSIV

Q9FWS3 Zinc finger CCCH domain-containing protein 16

1.1e-08

46.88

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Query:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        K V+       + ++ L C+G  +     +  CD+ GD+SYEELRAVAY+EAKRGI LQSIV +
Subjt:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75340.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

7.9e-10

46.88

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Query:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        K V+       + ++ L C+G  +     +  CD+ GD+SYEELRAVAY+EAKRGI LQSIV +
Subjt:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

AT1G75340.2 Zinc finger C-x8-C-x5-C-x3-H type family protein

7.9e-10

46.88

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Query:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK
        K V+       + ++ L C+G  +     +  CD+ GD+SYEELRAVAY+EAKRGI LQSIV +
Subjt:  KAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRK

Sequences

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CDS sequence

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ATGAATGGTTCCCCCCCCTCAAGGGGCATTGCGGCTGAAAAGGGCCTTGGGTTTCTATTGTTGCTTTTTTGGCAAATCTTCTGTCTTCTTTGGCTTCTAATGACAGGGAG
GATAGAAAGAAGTGATCCCTTGAAAGCAGTGCTAAACCAACAGATCTTCCAAAACCAGCATCTCTTTGGGCTTGATTGTTTTGGTTCAGCTCGCTTGAAAGCCTCATCTT
TTGAACATTGTGACATTGTTGGAGATGTTAGTTATGAAGAACTAAGGGCGGTTGCATATGATGAAGCCAAACGAGGAATAAGTTTGCAATCAATTGTAAGGAAACATGTT
GACTGCTTTTGA

mRNA sequence

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Protein sequence

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MNGSPPSRGIAAEKGLGFLLLLFWQIFCLLWLLMTGRIERSDPLKAVLNQQIFQNQHLFGLDCFGSARLKASSFEHCDIVGDVSYEELRAVAYDEAKRGISLQSIVRKHV
DCF

Spg021671 (gene) of Sponge gourd (cylindrica) v1 genome