; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021681 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021681
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold2:17341987..17346876
RNA-Seq ExpressionSpg021681
SyntenySpg021681
Gene Ontology termsGO:0007010 - cytoskeleton organization (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047098.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0629.17Show/hide
Query:  AIFLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFP
        ++F   +   ++I   W   L     G+   G +L+NW K+  S ++G L +  L    +AL  KW+WCY +E +A+WR+LI+       P  I   +  
Subjt:  AIFLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFP

Query:  LASQFPLLYRNLKDEEAIEW
          S+ P  +R++ D   I+W
Subjt:  LASQFPLLYRNLKDEEAIEW
KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0636.25Show/hide
Query:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
        F     +Y+ I   W   L G  E   +   HL+NWN      + G L +  LKD  +AL  KW+W Y+NES+++W+K I
Subjt:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
KAE8691187.1 hypothetical protein F3Y22_tig00110890pilonHSYRG00015 [Hibiscus syriacus]2.2e-0638.46Show/hide
Query:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
        EG+S++ IH VNW ++ LS+++G L +  L    R L  KW+W + NE D++W+ +I    +A+T
Subjt:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
KAE8714051.1 Myosin-15 [Hibiscus syriacus]1.7e-0638.46Show/hide
Query:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
        EG+S++ IH VNW ++ LS+++G L +  L    R L  KW+W + NE D++W+ +I    +A+T
Subjt:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0636.25Show/hide
Query:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
        F     +Y+ I   W   L G  E   +   HL+NWN      + G L +  LKD  +AL  KW+W Y+NES+++W+K I
Subjt:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein8.1e-0736.25Show/hide
Query:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
        F     +Y+ I   W   L G  E   +   HL+NWN      + G L +  LKD  +AL  KW+W Y+NES+++W+K I
Subjt:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
A0A5D3C104 LINE-1 retrotransposable element ORF2 protein6.2e-0729.17Show/hide
Query:  AIFLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFP
        ++F   +   ++I   W   L     G+   G +L+NW K+  S ++G L +  L    +AL  KW+WCY +E +A+WR+LI+       P  I   +  
Subjt:  AIFLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFP

Query:  LASQFPLLYRNLKDEEAIEW
          S+ P  +R++ D   I+W
Subjt:  LASQFPLLYRNLKDEEAIEW
A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein8.1e-0736.25Show/hide
Query:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
        F     +Y+ I   W   L G  E   +   HL+NWN      + G L +  LKD  +AL  KW+W Y+NES+++W+K I
Subjt:  FLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLI
A0A6A3BDL8 Myosin-158.1e-0738.46Show/hide
Query:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
        EG+S++ IH VNW ++ LS+++G L +  L    R L  KW+W + NE D++W+ +I    +A+T
Subjt:  EGASRTGIHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATT
A0A7N2LZJ6 Uncharacterized protein2.8e-0734.23Show/hide
Query:  IHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFPLASQFPLLYRNLKDEEA-IEWEEPVFALSPVS
        IHLVNW+K+   +  G L +  LK    AL  KW+W Y  E+DA WR++I   D             PL  +FP LY   +  EA +    P  A    +
Subjt:  IHLVNWNKILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFPLASQFPLLYRNLKDEEA-IEWEEPVFALSPVS

Query:  LIKGTFLDMDN
           G  L +DN
Subjt:  LIKGTFLDMDN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)2.8e-0431.32Show/hide
Query:  EILLENVELILEAFDYLQLPFALKQ---GTCKVRTCTLKLHLLFSLAPLTIRTTANDFENLHSNYLFLSQNHRATFSYLAIMHQSFAGTYCPQLASLGAA
        E+LLENVEL  EAF+YLQLP ALKQ   G   ++    KLH      P+TI         +   ++  SQ +   +S   +  + FAG    +LAS   A
Subjt:  EILLENVELILEAFDYLQLPFALKQ---GTCKVRTCTLKLHLLFSLAPLTIRTTANDFENLHSNYLFLSQNHRATFSYLAIMHQSFAGTYCPQLASLGAA

Query:  LRCNVLSHTLYQN-GRFTWLSFCENLTTTLLDR-KIQNPNAIFLPTTCLYES----IGMRWS------MHLAGPQEGASRTG
             LS  ++ N G  +++S+   +T  +LD  ++   N   L +    ES    +G+R+S       +  GP  G  R G
Subjt:  LRCNVLSHTLYQN-GRFTWLSFCENLTTTLLDR-KIQNPNAIFLPTTCLYES----IGMRWS------MHLAGPQEGASRTG
AT5G24740.2 Protein of unknown function (DUF1162)2.8e-0431.32Show/hide
Query:  EILLENVELILEAFDYLQLPFALKQ---GTCKVRTCTLKLHLLFSLAPLTIRTTANDFENLHSNYLFLSQNHRATFSYLAIMHQSFAGTYCPQLASLGAA
        E+LLENVEL  EAF+YLQLP ALKQ   G   ++    KLH      P+TI         +   ++  SQ +   +S   +  + FAG    +LAS   A
Subjt:  EILLENVELILEAFDYLQLPFALKQ---GTCKVRTCTLKLHLLFSLAPLTIRTTANDFENLHSNYLFLSQNHRATFSYLAIMHQSFAGTYCPQLASLGAA

Query:  LRCNVLSHTLYQN-GRFTWLSFCENLTTTLLDR-KIQNPNAIFLPTTCLYES----IGMRWS------MHLAGPQEGASRTG
             LS  ++ N G  +++S+   +T  +LD  ++   N   L +    ES    +G+R+S       +  GP  G  R G
Subjt:  LRCNVLSHTLYQN-GRFTWLSFCENLTTTLLDR-KIQNPNAIFLPTTCLYES----IGMRWS------MHLAGPQEGASRTG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATGAGGAACTCCTGGATCATCTCACTGTAGTCTCTGTAGCTCCTGATCTGCACCCCAAAGGCCTCAAAGAACAAACTCCAAATAGATCTTGCATAGTTCTAAG
AGCCACACTCACTACTTATGCAGAGGAAATATTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTTGCCCTGAAGCAAGGTACTTGTA
AGGTTCGGACCTGTACCCTCAAACTCCATTTACTTTTTTCACTTGCTCCATTGACCATTAGGACAACCGCTAATGATTTTGAAAATTTGCATTCAAACTACCTATTTCTC
TCTCAGAATCACAGGGCCACATTTTCATATCTTGCGATTATGCATCAATCCTTTGCGGGGACTTATTGCCCTCAATTAGCTAGTCTAGGTGCTGCCCTCAGATGCAACGT
TCTCTCTCACACACTTTACCAGAATGGAAGGTTTACATGGTTGAGCTTTTGTGAGAACCTAACCACGACTCTTCTAGACAGGAAAATTCAAAATCCCAATGCCATCTTTT
TGCCCACGACTTGTTTGTATGAATCTATTGGAATGAGATGGTCAATGCATTTGGCTGGTCCACAGGAGGGAGCATCTAGAACAGGCATCCATCTTGTGAATTGGAACAAA
ATTCTTCTCTCTTTGGACAAGGGAAGTCTCAATCTATGTTCCTTGAAAGATGAGAAAAGAGCACTCTTTGTAAAATGGATATGGTGTTACAACAATGAAAGCGATGCTAT
ATGGAGGAAACTTATCAAAGTGGGAGATGATGCAACGACCCCTGTTTGGATCGCCCTTGGGTTATTTCCACTGGCTTCCCAATTCCCCTTGTTATACAGGAACTTGAAGG
ATGAAGAGGCAATTGAATGGGAAGAACCTGTATTTGCCCTCTCTCCGGTTTCTCTCATAAAGGGAACATTCTTGGATATGGACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATGAGGAACTCCTGGATCATCTCACTGTAGTCTCTGTAGCTCCTGATCTGCACCCCAAAGGCCTCAAAGAACAAACTCCAAATAGATCTTGCATAGTTCTAAG
AGCCACACTCACTACTTATGCAGAGGAAATATTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTTGCCCTGAAGCAAGGTACTTGTA
AGGTTCGGACCTGTACCCTCAAACTCCATTTACTTTTTTCACTTGCTCCATTGACCATTAGGACAACCGCTAATGATTTTGAAAATTTGCATTCAAACTACCTATTTCTC
TCTCAGAATCACAGGGCCACATTTTCATATCTTGCGATTATGCATCAATCCTTTGCGGGGACTTATTGCCCTCAATTAGCTAGTCTAGGTGCTGCCCTCAGATGCAACGT
TCTCTCTCACACACTTTACCAGAATGGAAGGTTTACATGGTTGAGCTTTTGTGAGAACCTAACCACGACTCTTCTAGACAGGAAAATTCAAAATCCCAATGCCATCTTTT
TGCCCACGACTTGTTTGTATGAATCTATTGGAATGAGATGGTCAATGCATTTGGCTGGTCCACAGGAGGGAGCATCTAGAACAGGCATCCATCTTGTGAATTGGAACAAA
ATTCTTCTCTCTTTGGACAAGGGAAGTCTCAATCTATGTTCCTTGAAAGATGAGAAAAGAGCACTCTTTGTAAAATGGATATGGTGTTACAACAATGAAAGCGATGCTAT
ATGGAGGAAACTTATCAAAGTGGGAGATGATGCAACGACCCCTGTTTGGATCGCCCTTGGGTTATTTCCACTGGCTTCCCAATTCCCCTTGTTATACAGGAACTTGAAGG
ATGAAGAGGCAATTGAATGGGAAGAACCTGTATTTGCCCTCTCTCCGGTTTCTCTCATAAAGGGAACATTCTTGGATATGGACAACTAG
Protein sequenceShow/hide protein sequence
MADEELLDHLTVVSVAPDLHPKGLKEQTPNRSCIVLRATLTTYAEEILLENVELILEAFDYLQLPFALKQGTCKVRTCTLKLHLLFSLAPLTIRTTANDFENLHSNYLFL
SQNHRATFSYLAIMHQSFAGTYCPQLASLGAALRCNVLSHTLYQNGRFTWLSFCENLTTTLLDRKIQNPNAIFLPTTCLYESIGMRWSMHLAGPQEGASRTGIHLVNWNK
ILLSLDKGSLNLCSLKDEKRALFVKWIWCYNNESDAIWRKLIKVGDDATTPVWIALGLFPLASQFPLLYRNLKDEEAIEWEEPVFALSPVSLIKGTFLDMDN