CuGenDBv2

Gene ID	Spg021771
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SpoU_sub_bind domain-containing protein
Genome location	scaffold2:7860602..7862101
RNA-Seq Expression	Spg021771
Synteny	Spg021771
Gene Ontology terms	GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR013123 - RNA 2-O ribose methyltransferase, substrate binding IPR029028 - Alpha/beta knot methyltransferases IPR029064 - 50S ribosomal protein L30e-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586465.1 rRNA methyltransferase 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

6.7e-59

55.98

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVD+ ++K+ND+ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

KAG7021321.1 rRNA methyltransferase 1, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.7e-59

55.98

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVD+ ++K+ND+ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

XP_022965658.1 uncharacterized protein LOC111465489 [Cucurbita maxima]

1.8e-59

56.76

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVDV I++DND+ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

XP_023536668.1 rRNA methyltransferase 1, mitochondrial [Cucurbita pepo subsp. pepo]

2.3e-59

56.37

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVD+ ++KDND+ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

XP_038880007.1 uncharacterized protein LOC120071698 [Benincasa hispida]

1.1e-61

57.31

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        M+GEGVYG+GPVLAALSAGRREFYALYMQEG+DL NNN KKKDKKGFEKVLRLAEKNALTIKEI KHDLNMISDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEFE
          PTILVLGSEGTGLRPLVERS SQLVRI GNIPV+VTI+K+ND+ETTQP+NVC  DEF+
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEFE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQ13 uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_5913

2.3e-57

55.6

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        M+GEGVYGVGPVLAALSAGRREFYALYMQEG+DL NNN KKKDKKGFEKVL+LAEKNALTIKEI KHDLNMISDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIV
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY                                 + 
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIV

Query:  RCPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLVRI GNIP +VTI+K+ND+ET   T+ CS DEF
Subjt:  RCPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

A0A5D3CIS9 Putative tRNA/rRNA methyltransferase

2.3e-57

55.6

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        M+GEGVYGVGPVLAALSAGRREFYALYMQEG+DL NNN KKKDKKGFEKVL+LAEKNALTIKEI KHDLNMISDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIV
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY                                 + 
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIV

Query:  RCPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLVRI GNIP +VTI+K+ND+ET   T+ CS DEF
Subjt:  RCPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

A0A6J1CVE3 uncharacterized protein LOC111014564

1.2e-58

56.76

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN  KKDKKGFEKVLRLAE+NAL+IKEI KHDLNMI DN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLVR+ GNIPVDVT+EKDND E  Q TN CS DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

A0A6J1FCE1 rRNA methyltransferase 1, mitochondrial

2.8e-58

55.98

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVD+  +K+ND ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

A0A6J1HPM2 uncharacterized protein LOC111465489

8.6e-60

56.76

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Query:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------
        MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL NNN KKKDKKGFEKVLRLAE+NALT+KEI KHDLNM+SDN PH+                     
Subjt:  MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE---------------------

Query:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------
                                          GVVLCAKNSAPLSG VSKASAGSLELM+LRY      F+                           
Subjt:  ----------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY------FIVR-------------------------

Query:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF
          PTILVLGSEGTGLRPLVERS SQLV+I GNIPVDV I++DND+ETTQPT   S DEF
Subjt:  -CPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein

1.7e-44

45.9

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Query:  GEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE-----------------------
        GE VYGV PVLAALS GRREFYALY+QEGLDL +NN KKKDKKGFE+VL+++EK  L IKE  KHDLNM++DN PH+                       
Subjt:  GEGVYGVGPVLAALSAGRREFYALYMQEGLDL-NNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHE-----------------------

Query:  --------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIVRC
                                        GVV+CAKNSAPLS  VSKASAGSLE+M+LRY                                 +   
Subjt:  --------------------------------GVVLCAKNSAPLSGAVSKASAGSLELMKLRY--------------------------------FIVRC

Query:  PTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVE
        PTILVLG+EGTGLRPLVERS + LVRI+GN+P +V + + +D E
Subjt:  PTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVE

Sequences

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CDS sequence

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ATGGTTGGTGAAGGAGTTTATGGGGTTGGACCAGTTTTGGCTGCTTTGTCAGCTGGAAGAAGAGAGTTCTATGCATTATATATGCAAGAAGGACTTGACTTGAACAACAA
TTACAAGAAGAAGGACAAGAAAGGGTTTGAGAAAGTTCTAAGGTTGGCTGAAAAGAATGCATTAACTATAAAGGAAATATTGAAGCATGATCTCAATATGATCTCCGATA
ACCTCCCCCATGAAGGGGTTGTTTTATGTGCAAAAAATTCAGCTCCATTAAGTGGTGCTGTTAGTAAAGCAAGTGCTGGTTCACTTGAGCTAATGAAGCTTAGATATTTT
ATCGTCCGGTGCCCAACGATCCTAGTCTTGGGCAGCGAAGGAACTGGTTTGAGGCCCTTGGTGGAGAGATCCTACTCACAGCTCGTTAGAATCACTGGAAATATTCCAGT
TGATGTAACAATAGAGAAAGACAATGATGTCGAAACAACACAACCAACAAACGTGTGCTCGGCCGACGAGTTCGAGCTTAAACGTCAGCGTTGCAACAGGTCTTTGGCTT
TAGCACTTGAAGGTTTTGTAAATCTCCAATTTGAATTGTAG

mRNA sequence

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Protein sequence

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MVGEGVYGVGPVLAALSAGRREFYALYMQEGLDLNNNYKKKDKKGFEKVLRLAEKNALTIKEILKHDLNMISDNLPHEGVVLCAKNSAPLSGAVSKASAGSLELMKLRYF
IVRCPTILVLGSEGTGLRPLVERSYSQLVRITGNIPVDVTIEKDNDVETTQPTNVCSADEFELKRQRCNRSLALALEGFVNLQFEL

Spg021771 (gene) of Sponge gourd (cylindrica) v1 genome