CuGenDBv2

Gene ID	Spg021791
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	scaffold2:10924261..10924745
RNA-Seq Expression	Spg021791
Synteny	Spg021791
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]

1.4e-30

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.4e-30

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

1.4e-30

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

1.4e-30

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

1.4e-30

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

6.7e-31

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

6.7e-31

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A0A218KG28 DNA-directed RNA polymerase subunit beta

6.7e-31

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A0A249RZI0 DNA-directed RNA polymerase subunit beta

6.7e-31

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

6.7e-31

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

SwissProt top hits

e value

%identity

Alignment

A4QJA7 DNA-directed RNA polymerase subunit beta

2.0e-32

91.67

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A4QJJ1 DNA-directed RNA polymerase subunit beta

2.0e-32

91.67

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

A4QK10 DNA-directed RNA polymerase subunit beta

2.0e-32

91.67

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

P50546 DNA-directed RNA polymerase subunit beta

2.0e-32

91.67

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

Q4VZP1 DNA-directed RNA polymerase subunit beta

1.8e-33

94.44

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

Arabidopsis top hits

e value

%identity

Alignment

AT4G21710.1 DNA-directed RNA polymerase family protein

1.4e-04

31.15

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKL
        MP+   G   D++ NP  +PSRM +GQ+ EC +G   + + +     PF +      S+ L
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKL

ATCG00190.1 RNA polymerase subunit beta

1.4e-33

91.67

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Query:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK
        MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFS+LYEA ++
Subjt:  MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEK

Sequences

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CDS sequence

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ATGCCTTATTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGCGGG
GAGTTTGCTAGATAGACATTATCGAATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACTAGTCTTTTCTAAATTATATGAAGCCAAAGAAAAAGGGA
GGGCCCACTTATCTCTTCCTTCTCCGAGCTCGAGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATC
GATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

mRNA sequence

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Protein sequence

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MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSKLYEAKEKGRAHLSLPSPSSSYGRRNREESISNNRFYYGTAHDVHI
DLLCASASSIG

Spg021791 (gene) of Sponge gourd (cylindrica) v1 genome