CuGenDBv2

Gene ID	Spg021892
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Eukaryotic translation initiation factor 3 subunit M
Genome location	scaffold2:9581807..9582118
RNA-Seq Expression	Spg021892
Synteny	Spg021892
Gene Ontology terms	GO:0001732 - formation of cytoplasmic translation initiation complex (biological process) GO:0016282 - eukaryotic 43S preinitiation complex (cellular component) GO:0033290 - eukaryotic 48S preinitiation complex (cellular component) GO:0071541 - eukaryotic translation initiation factor 3 complex, eIF3m (cellular component) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR000717 - Proteasome component (PCI) domain IPR036390 - Winged helix DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578547.1 Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

KAG7016108.1 Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

TYK00620.1 eukaryotic translation initiation factor 3 subunit M [Cucumis melo var. makuwa]

3.8e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

XP_011656013.1 eukaryotic translation initiation factor 3 subunit M [Cucumis sativus]

3.8e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

XP_022938986.1 eukaryotic translation initiation factor 3 subunit M-like [Cucurbita moschata]

4.9e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXL1 Eukaryotic translation initiation factor 3 subunit M

1.8e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

A0A1S3CA60 Eukaryotic translation initiation factor 3 subunit M

6.9e-21

74.07

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL  NDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

A0A5D3BNN4 Eukaryotic translation initiation factor 3 subunit M

1.8e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

A0A6J1BYH7 Eukaryotic translation initiation factor 3 subunit M

5.3e-21

74.07

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSN+SARIPYALIKD L INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        QQ W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

A0A6J1FEM3 Eukaryotic translation initiation factor 3 subunit M

2.4e-21

75.31

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT
        MRLLSLVDLGSNESARIPYALIKDTL INDDEVELW+VKAITSKLIDCKMDQMNEVVIV+        Q  W T+   + T
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTL-------QQFWATMSVYIFT

SwissProt top hits

e value

%identity

Alignment

Q4PEV8 Eukaryotic translation initiation factor 3 subunit M

3.3e-04

42.86

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Query:  MRLLSLVDL-GSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNE
        +RLL L DL     SA + YA I  TL+I  D+VELW++  I + L+  K+ Q+N+
Subjt:  MRLLSLVDL-GSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNE

Q54KZ8 Eukaryotic translation initiation factor 3 subunit M

1.4e-07

44.07

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV
        +RLLSL  L ++E +++PY+LI   L I+++EVE+W++ A+   L+D K+DQ+N +V V
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV

Q7SEK1 Eukaryotic translation initiation factor 3 subunit M

4.4e-04

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Query:  MRLLSLVDL-GSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV
        MRLL+   L  S  +  IPYA I   L I D++VE+W +  I SKL++ ++ Q  +V +V
Subjt:  MRLLSLVDL-GSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV

Arabidopsis top hits

e value

%identity

Alignment

AT3G02200.1 Proteasome component (PCI) domain protein

3.8e-19

74.58

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV
        MRLLSLVDL S+ES +IPY  IKDTL +N+ +VELWIVKAIT+KLI+CKMDQMN+V+IV
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV

AT3G02200.2 Proteasome component (PCI) domain protein

2.9e-19

73.33

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVT
        MRLLSLVDL S+ES +IPY  IKDTL +N+ +VELWIVKAIT+KLI+CKMDQMN+V+IV+
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVT

AT5G15610.1 Proteasome component (PCI) domain protein

2.2e-19

74.58

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV
        MRLLSLVDL S++S +IPYA IK+TL +ND+EVELW+VKAIT+KL+ CKMDQMN+VVIV
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIV

AT5G15610.2 Proteasome component (PCI) domain protein

1.7e-19

73.33

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Query:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVT
        MRLLSLVDL S++S +IPYA IK+TL +ND+EVELW+VKAIT+KL+ CKMDQMN+VVIV+
Subjt:  MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVT

Sequences

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CDS sequence

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ATGAGGCTATTGTCATTGGTGGATCTTGGCTCAAATGAATCTGCCCGCATTCCATATGCTCTCATTAAGGACACGCTTAGTATTAATGATGACGAGGTGGAACTGTGGAT
CGTGAAGGCCATTACTTCCAAATTGATTGACTGCAAAATGGACCAGATGAATGAAGTTGTGATTGTGACATTACAACAATTCTGGGCTACGATGTCGGTTTACATTTTTA
CAACAATGATGGATTGA

mRNA sequence

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Protein sequence

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MRLLSLVDLGSNESARIPYALIKDTLSINDDEVELWIVKAITSKLIDCKMDQMNEVVIVTLQQFWATMSVYIFTTMMD

Spg021892 (gene) of Sponge gourd (cylindrica) v1 genome