; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021924 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021924
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationscaffold2:6681986..6683036
RNA-Seq ExpressionSpg021924
SyntenySpg021924
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653078.1 hypothetical protein Csa_020050 [Cucumis sativus]1.2e-6595.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

KAG6589864.1 hypothetical protein SDJN03_15287, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7096.69Show/hide
Query:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI
        MSWS GDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYC AVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI
Subjt:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI

Query:  PPGWKSGDWICPRYTHNNKLY
        PPGWKSGDW+CPRY HNNKLY
Subjt:  PPGWKSGDWICPRYTHNNKLY

XP_008465019.2 PREDICTED: uncharacterized protein LOC103502740 isoform X1 [Cucumis melo]1.2e-6595.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

XP_008465020.2 PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]1.2e-6595.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

XP_008465021.2 PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]1.2e-6595.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

TrEMBL top hitse value%identityAlignment
A0A0A0LWE1 Uncharacterized protein5.8e-6695.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

A0A1S3CMY6 uncharacterized protein LOC103502740 isoform X25.8e-6695.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

A0A1S3CNB1 uncharacterized protein LOC103502740 isoform X15.8e-6695.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

A0A1S3CPF6 uncharacterized protein LOC103502740 isoform X35.8e-6695.65Show/hide
Query:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
        KGMSWS GDWICNVCQNVNFKKREACHRC YPKYGGPDPSTYSYNKTE LAGDWYC  VSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA
Subjt:  KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDA

Query:  SIPPGWKSGDWICPR
        SIPPGWKSGDWICPR
Subjt:  SIPPGWKSGDWICPR

A0A6J1JBM0 zinc finger Ran-binding domain-containing protein 2-like7.6e-6697.35Show/hide
Query:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI
        MSWS GDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYC AVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI
Subjt:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASI

Query:  PPGWKSGDWICPR
        PPGWKSGDW+CPR
Subjt:  PPGWKSGDWICPR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.1e-0525.32Show/hide
Query:  GDWICNVCQNVNFKKREACHRCSYP---------------------------------KYGGP------------------------DPSTYSY-NKTEV
        GDW C +C   NF++R +C RCS+P                                  YGG                           S+ S+      
Subjt:  GDWICNVCQNVNFKKREACHRCSYP---------------------------------KYGGP------------------------DPSTYSY-NKTEV

Query:  LAGDWYCNAVSCGAHNYASRPNCFRCGAFK---SVYPGDYGAYMMGSDQYGSDASIPP
         AGDW C +  CG HN+A    C RCGA +   +V        + GS  + S + IPP
Subjt:  LAGDWYCNAVSCGAHNYASRPNCFRCGAFK---SVYPGDYGAYMMGSDQYGSDASIPP

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein3.7e-0426.51Show/hide
Query:  GDWICNVCQNVNFKKREACHRCS-YPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRC---GAFKSVYPGDY
        GDW C  C+ +NF K   C RC  + +           +   +  GDW C   +C   N++    C RC      + + PG++
Subjt:  GDWICNVCQNVNFKKREACHRCS-YPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRC---GAFKSVYPGDY

AT2G17975.1 zinc finger (Ran-binding) family protein3.7e-1232.35Show/hide
Query:  GDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSV-------YPG----------------
        GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW C    C  +NYASR  C +CG  K V        PG                
Subjt:  GDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSV-------YPG----------------

Query:  -DYGAYMMGSDQYGSDASIPPGWKSGDWICPRYTHN
         D    ++      + AS+   W+SGDWIC    HN
Subjt:  -DYGAYMMGSDQYGSDASIPPGWKSGDWICPRYTHN

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.4e-4362.61Show/hide
Query:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGD-YGAYMMGSDQYGSD-A
        MSW+GGDW+C  CQ+ NFKKRE+C +C YPK+GG D STY YN+TEV+AGDWYC A++CG+HNYASR +C+RCG  K  Y    YGA M+    YG+D A
Subjt:  MSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGD-YGAYMMGSDQYGSD-A

Query:  SIPPGWKSGDWICPR
        + PPGWK+GDW+CPR
Subjt:  SIPPGWKSGDWICPR

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.6e-2037.4Show/hide
Query:  GDWICNVCQNVNFKKREACHRC-------------SYPKYGGPDPSTYSYNK-TEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFK-SVYPGDYGAYMMG
        GDW C  C ++NF++R++C RC              +  +GG   S + +   ++V  GDWYC   +CG HN+ASR  CF+CG FK     G  G  + G
Subjt:  GDWICNVCQNVNFKKREACHRC-------------SYPKYGGPDPSTYSYNK-TEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFK-SVYPGDYGAYMMG

Query:  SDQYGSD--ASIPPG------WKSGDWICPR
           + +D   S  PG      WKSGDWIC R
Subjt:  SDQYGSD--ASIPPG------WKSGDWICPR

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein3.9e-2235.77Show/hide
Query:  GDWICNVCQNVNFKKREACHRCSYPKYGG------------PDPSTYSYNK-TEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGD---------
        GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +V  GDWYCN   CG HN+A+R +CF+CGA K  +            
Subjt:  GDWICNVCQNVNFKKREACHRCSYPKYGG------------PDPSTYSYNK-TEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGD---------

Query:  -------YGAYMMGSDQYGSDASIPPGWKSGDWICPR
                G +  G    G   +    WKSGDWICPR
Subjt:  -------YGAYMMGSDQYGSDASIPPGWKSGDWICPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGGAATGAGCTGGTCAGGAGGAGACTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCATGCCATCGATGCAGTTACCCCAAGTATGGAGGCCC
AGACCCTTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCTGGAGACTGGTACTGCAACGCCGTAAGCTGCGGAGCTCACAACTACGCCAGCCGCCCAAACTGCTTTA
GATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATGGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCGCCTGGATGGAAATCTGGCGAC
TGGATTTGCCCTAGGTACACACACAACAATAAACTTTATAAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTC
GGTGGTGCAGTTTAAAGCGGGAAGGAATTTTGGAAGGCTCTCCTTATGCGATTATATCGCCTTCTTGGCATCTGATCCCTATCCAAATGCTGCCTTTTTCTTTTTCTTTT
TTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
AAGGGAATGAGCTGGTCAGGAGGAGACTGGATATGCAACGTTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCATGCCATCGATGCAGTTACCCCAAGTATGGAGGCCC
AGACCCTTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCTGGAGACTGGTACTGCAACGCCGTAAGCTGCGGAGCTCACAACTACGCCAGCCGCCCAAACTGCTTTA
GATGTGGTGCATTTAAGTCCGTCTATCCTGGTGATTATGGCGCCTACATGATGGGTTCCGATCAGTATGGATCTGATGCAAGCATCCCGCCTGGATGGAAATCTGGCGAC
TGGATTTGCCCTAGGTACACACACAACAATAAACTTTATAAATGGGATGCGGAGTACATAATTATGCAAGCAGGATGGAGTGTTTTAAATGCAAAACACCAAGAGATTTC
GGTGGTGCAGTTTAAAGCGGGAAGGAATTTTGGAAGGCTCTCCTTATGCGATTATATCGCCTTCTTGGCATCTGATCCCTATCCAAATGCTGCCTTTTTCTTTTTCTTTT
TTCCTTTCTAA
Protein sequenceShow/hide protein sequence
KGMSWSGGDWICNVCQNVNFKKREACHRCSYPKYGGPDPSTYSYNKTEVLAGDWYCNAVSCGAHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGD
WICPRYTHNNKLYKWDAEYIIMQAGWSVLNAKHQEISVVQFKAGRNFGRLSLCDYIAFLASDPYPNAAFFFFFFPF