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Spg021934 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021934
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:14764293..14772016
RNA-Seq ExpressionSpg021934
SyntenySpg021934
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.8e-1739.41Show/hide
Query:  RVDSPFTE-----EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNP
        R  S F+E     ++YMS  E   SK+ E   KR+     +   DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++ 
Subjt:  RVDSPFTE-----EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNP

Query:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
          R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +   P ++    MGGP
Subjt:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.8e-2042.04Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR
        ++YMS  E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q     +   P ++    MGGP
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.4e-1936.25Show/hide
Query:  ELIDRVDSPFTEEKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD
        E + R     + E++  +++ L+ K+++++ +RS      ++ +K+ +          + D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+
Subjt:  ELIDRVDSPFTEEKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD

Query:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.3e-1740.13Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR
        ++YMS  E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q     +   P ++    MGGP
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

XP_030923012.1 uncharacterized protein LOC115949886 [Quercus lobata]8.7e-1736.59Show/hide
Query:  VDSPFTEEKYMSVEELL---KSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNR
        +D  +   KYM+VE+ L   + K  +RE +  +  D   +  +     D  R RP  G    +F  +TP + P +Q+LM+I+N   L  P KLK +P+ R
Subjt:  VDSPFTEEKYMSVEELL---KSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNR

Query:  DKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD---QRWPRPTRDDPGKDMG
         + +YC FHRDHGH T NC  LK +IEALIR G L+ F ++   D   ++ PR   + P   +G
Subjt:  DKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD---QRWPRPTRDDPGKDMG

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128058.5e-1839.41Show/hide
Query:  RVDSPFTE-----EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNP
        R  S F+E     ++YMS  E   SK+ E   KR+     +   DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++ 
Subjt:  RVDSPFTE-----EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNP

Query:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
          R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q     +   P ++    MGGP
Subjt:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

A0A6J1DWY0 uncharacterized protein LOC1110252931.8e-2042.04Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR
        ++YMS  E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q     +   P ++    MGGP
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

A0A6J1DYL6 uncharacterized protein LOC1110257856.5e-1840.13Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR
        ++YMS  E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q     +   P ++    MGGP
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKD----MGGP

A0A6J1DZ52 uncharacterized protein LOC1110256126.9e-2036.25Show/hide
Query:  ELIDRVDSPFTEEKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD
        E + R     + E++  +++ L+ K+++++ +RS      ++ +K+ +          + D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+
Subjt:  ELIDRVDSPFTEEKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPD

Query:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  NRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

A0A7N2N9G0 Reverse transcriptase2.1e-1637.58Show/hide
Query:  KYMSVEELL---KSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLF
        KYM+ E+ L   + K  +RE +  +  D   +K +     +  R RP  G    +F  +TP + P +Q+LM+I++   L  P KLKS+P+ R + +YC F
Subjt:  KYMSVEELL---KSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLF

Query:  HRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD----QRWPRPTRDDPGKDMG
        HRDHGH T +C  LK +IEALIR G L+ F +K  AD     + PR   + P   +G
Subjt:  HRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD----QRWPRPTRDDPGKDMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTATGTTATAGGCAATTTTGGACCACCCAACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAG
GGTCGGGCCAACTTGGCCCGACCCATATGGTCGGCCTCGGCCCAAGGGCGAGGCCGATCATTCGACCCGCTTGCGAGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTGA
TGCCTCTAGCCGCCCCGGTTTCGCCTGGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAA
ATTCACTGTCGATTATCACGTGGAGCAAAGGGGATGGAGAAGAGAAATCAAGATATAAACACAGAAAATTCGGATGGTGACCGCCACCAGCGGAGGTCACGGGAAGAAGG
CCGAGATCGACCTCAGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGA
TGGATCATAATTTGTTTAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGATGAGAGGCTGGTTAGGGATCCTCGTACTATTTTGAGGAGCCCA
GAGTCAAGCACACTTAGGGGACGTGACTACACAGTTTTTACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGAAGAAGCGCAGAAGTGCCAAAAC
TGCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCAAGGCCAAGAAAGACA
ATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAAAGGAACTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGAGACCTCGGAGACCAAGACTTGGAAGAACTAATC
GACCGGGTCGACTCGCCCTTCACAGAAGAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGA
CACTAGGAAGGACAAAAAGCAGCAGACCGATGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGG
AGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGTGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGAT
CATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAAATTGAAGCGCTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCTGAGGCAGACCAGAGGTG
GCCGAGGCCGACCAGAGACGACCCAGGCAAAGACATGGGTGGACCTCAACTGGAAATTCTGCACTTATCATGTAATCAGAGCATTGTTGCTCACTTTATTTTTGGTAGAG
CCCACGCCACTGCTCACGAGCCTAGACTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATGATCGTGAGATCTTCCATTTTTCCTATATTTTA
CTTGTGGATAAGCCCTGGATCCGGAATGATGTACTCCGAATAACCAAGTACGGGGGTCTCGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGTCCGGTGGGGGT
TCGGGGGCAACGCCCCCTAAGAAAAATTAGAAAAATGCTCGGCCTCTTCCCGAGGCCGAGGCCGACCAGACAAGCTAAAAGGGGGATGGCAGTGCTCGGCCTCTTCCCGA
GGCTGACCAGCACCACTTTTGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCTCGACCCATATGGTCGGCCTCGGCTCGCTTGCGAGG
GCCGAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGTATGAGCAG
CATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGA
AGCTAATCTGGGGCTGTGTTTTGCTCAGATTGTTTCAACCAATGGAGAAGGATCCAAGTGGCAAAATGCATCCAATCAGTCCTGATTTCTATGAAAGATACCGATATAAA
AGGAAAGGAGCCAAAGAAGGAAAGCCAGACGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTATGTTATAGGCAATTTTGGACCACCCAACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAG
GGTCGGGCCAACTTGGCCCGACCCATATGGTCGGCCTCGGCCCAAGGGCGAGGCCGATCATTCGACCCGCTTGCGAGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTGA
TGCCTCTAGCCGCCCCGGTTTCGCCTGGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAA
ATTCACTGTCGATTATCACGTGGAGCAAAGGGGATGGAGAAGAGAAATCAAGATATAAACACAGAAAATTCGGATGGTGACCGCCACCAGCGGAGGTCACGGGAAGAAGG
CCGAGATCGACCTCAGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGA
TGGATCATAATTTGTTTAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGATGAGAGGCTGGTTAGGGATCCTCGTACTATTTTGAGGAGCCCA
GAGTCAAGCACACTTAGGGGACGTGACTACACAGTTTTTACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGAAGAAGCGCAGAAGTGCCAAAAC
TGCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCAAGGCCAAGAAAGACA
ATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAAAGGAACTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGAGACCTCGGAGACCAAGACTTGGAAGAACTAATC
GACCGGGTCGACTCGCCCTTCACAGAAGAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGA
CACTAGGAAGGACAAAAAGCAGCAGACCGATGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGG
AGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGTGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGAT
CATGGACATTCAACTAGGAACTGCATTCAGCTAAAGGACGAAATTGAAGCGCTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCTGAGGCAGACCAGAGGTG
GCCGAGGCCGACCAGAGACGACCCAGGCAAAGACATGGGTGGACCTCAACTGGAAATTCTGCACTTATCATGTAATCAGAGCATTGTTGCTCACTTTATTTTTGGTAGAG
CCCACGCCACTGCTCACGAGCCTAGACTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATGATCGTGAGATCTTCCATTTTTCCTATATTTTA
CTTGTGGATAAGCCCTGGATCCGGAATGATGTACTCCGAATAACCAAGTACGGGGGTCTCGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGTCCGGTGGGGGT
TCGGGGGCAACGCCCCCTAAGAAAAATTAGAAAAATGCTCGGCCTCTTCCCGAGGCCGAGGCCGACCAGACAAGCTAAAAGGGGGATGGCAGTGCTCGGCCTCTTCCCGA
GGCTGACCAGCACCACTTTTGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCTCGACCCATATGGTCGGCCTCGGCTCGCTTGCGAGG
GCCGAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGTATGAGCAG
CATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGA
AGCTAATCTGGGGCTGTGTTTTGCTCAGATTGTTTCAACCAATGGAGAAGGATCCAAGTGGCAAAATGCATCCAATCAGTCCTGATTTCTATGAAAGATACCGATATAAA
AGGAAAGGAGCCAAAGAAGGAAAGCCAGACGACTAG
Protein sequenceShow/hide protein sequence
MDYVIGNFGPPNAQGADEDVRAKIGLGDRPRGRTDQRVGPTWPDPYGRPRPKGEADHSTRLRGPSSVTSSRSLMPLAAPVSPGIGGGVASTTPVCRFTLLQATSSPALKQ
IHCRLSRGAKGMEKRNQDINTENSDGDRHQRRSREEGRDRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLFRILRILDKPGPSTKTPDERLVRDPRTILRSP
ESSTLRGRDYTVFTPSYGHTKTDLRNLIEKKRRSAKTAESEARAAEAEARAAEAEARAAEAEARLAEAKAKKDNPPWKTELLNTLKELGNPQGDLQKSRDLGDQDLEELI
DRVDSPFTEEKYMSVEELLKSKKSEREHKRSSSSDHDTRKDKKQQTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRD
HGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDMGGPQLEILHLSCNQSIVAHFIFGRAHATAHEPRLPSLPHLRAQTLAQALHDREIFHFSYIL
LVDKPWIRNDVLRITKYGGLADRSASRGPGAKRPVGVRGQRPLRKIRKMLGLFPRPRPTRQAKRGMAVLGLFPRLTSTTFGWETDPEEEPTKGPGQLGSTHMVGLGSLAR
AELGHLLSVPDASSRPGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFTLLQATSSPALKQIHCRLSRGAKLIWGCVLLRLFQPMEKDPSGKMHPISPDFYERYRYK
RKGAKEGKPDD