CuGenDBv2

Gene ID	Spg021939
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCR4-NOT transcription complex subunit 10
Genome location	scaffold2:6190341..6196536
RNA-Seq Expression	Spg021939
Synteny	Spg021939
Gene Ontology terms	GO:0030014 - CCR4-NOT complex (cellular component)
InterPro domains	IPR039740 - CCR4-NOT transcription complex subunit 10

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6587882.1 CCR4-NOT transcription complex subunit 10, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-30

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS  PNRDGSSSA EDDGAV VTAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

TYK06382.1 CCR4-NOT transcription complex subunit 10 [Cucumis melo var. makuwa]

9.5e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRD SSSA EDDGA+S+TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_008443951.1 PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo]

9.5e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRD SSSA EDDGA+S+TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_022965291.1 CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima]

1.6e-30

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS  PNRDGSSSA EDDGAV VTAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_038878790.1 CCR4-NOT transcription complex subunit 10 [Benincasa hispida]

1.2e-30

62.14

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRDGSSSA EDDG +++TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B976 CCR4-NOT transcription complex subunit 10

4.6e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRD SSSA EDDGA+S+TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A5A7U7H5 CCR4-NOT transcription complex subunit 10

4.6e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRD SSSA EDDGA+S+TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A5D3C558 CCR4-NOT transcription complex subunit 10

4.6e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS APNRD SSSA EDDGA+S+TAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A6J1ERX5 CCR4-NOT transcription complex subunit 10-like isoform X1

7.8e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS  PNRDGSSSA EDDGAV VTAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A6J1HLA5 CCR4-NOT transcription complex subunit 10-like isoform X1

7.8e-31

62.86

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MDARDSSSS  PNRDGSSSA EDDGAV VTAALAKEAASLFQSGKYA CVEVLNQLLQKKEDDPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G35430.1 Tetratricopeptide repeat (TPR)-like superfamily protein

8.6e-14

40.71

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Query:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI
        MD+RDS SS A  RD +SS ++D   +SVT+ LAK A S FQSGK+  C++VL QL Q K +DPK                                   
Subjt:  MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGI

Query:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
                   VLHN+AIAEY +DGCSN +KL+EVL  VK
Subjt:  WNAVLDSSAVYVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

Sequences

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CDS sequence

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ATGGACGCTCGAGATTCATCTTCTTCGCCTGCCCCGAATCGAGATGGGTCCTCGTCGGCTGCTGAGGACGATGGGGCTGTATCCGTCACCGCTGCTCTCGCTAAGGAAGC
TGCATCGCTTTTCCAATCGGGCAAGTATGCTGCGTGTGTTGAGGTCTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGATGCGGTTTAAACTTTTGAATTCTA
TGATGGCGCAATTGTCCATTCAGTATAACCAAGATCACATTTCACTTTGTGGGAAGAAGAGTGTTGAGTATCTTGGAATTTGGAATGCTGTCCTCGACTCCTCAGCAGTT
TATGTGCTTCATAATATCGCCATTGCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTCGAAGTATTAAATAATGTCAAGTTTGAAGAATGTGCACAAGT
GGGGTGGAATGATGTTCAAGGCGACCGTTGGAATTTCAAGGAAAAATTGTTGACAAATGCTGCTGGAAATGAAAATCTGGGGGAGGCGTCGACGACATATGAGGTTATCG
AGTAG

mRNA sequence

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Protein sequence

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MDARDSSSSPAPNRDGSSSAAEDDGAVSVTAALAKEAASLFQSGKYAACVEVLNQLLQKKEDDPKMRFKLLNSMMAQLSIQYNQDHISLCGKKSVEYLGIWNAVLDSSAV
YVLHNIAIAEYLRDGCSNPKKLLEVLNNVKFEECAQVGWNDVQGDRWNFKEKLLTNAAGNENLGEASTTYEVIE

Spg021939 (gene) of Sponge gourd (cylindrica) v1 genome