; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021963 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021963
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:12196904..12201335
RNA-Seq ExpressionSpg021963
SyntenySpg021963
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]1.4e-1726.94Show/hide
Query:  FEEWVVLLWAIGYKRNEM---RQKKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQ
        FE   V+ W + Y+RN++   +  + V   ++ DW   ++  F+ + T  +D       R   +W+P     +K+N DA     +    + VV RD +G 
Subjt:  FEEWVVLLWAIGYKRNEM---RQKKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQ

Query:  VGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAME
        V  +    +  +      E +A   G RLA+E    P  +E+DS+ V  L+       +E+G+++ D +      +F   +F  R  NCVAH LA+L++ 
Subjt:  VGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAME

Query:  DRCDRVWMEEGPSCVLGLL
           + VW+E+ P  V  L+
Subjt:  DRCDRVWMEEGPSCVLGLL

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.0e-2839.55Show/hide
Query:  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSV
        D +KW   EE  V LWAI   RN+          + N+ DWV  YL  ++ +  G     LL G   R V  W PP    FKVNVDAAF   + +A + +
Subjt:  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSV

Query:  VCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTF--RECNCV
        + RDS   V  +A  F  ++ D   AE LAA  G+ LA+E    PF +ETDS +VF LL+ D E+ SE+G+L   ++R +++   IG  F+F  RE N  
Subjt:  VCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTF--RECNCV

Query:  AHLLARLAMEDRCDRVWMEE
        AH LAR+ M      VW+EE
Subjt:  AHLLARLAMEDRCDRVWMEE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.1e-2533.92Show/hide
Query:  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT-------------REMDLLGGSPSRAVCRWEPPGVDGFKVN
        +LRD +D L W  FEE VV LW++  +RN  +  K++V   +LA WV  Y+  F+ + T             ++   +  + +  +  W P     FK+ 
Subjt:  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT-------------REMDLLGGSPSRAVCRWEPPGVDGFKVN

Query:  VDAAF-CLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAG
         DA+F  ++  A    ++ RD  GQV  +AT + E++   D AE LAA  GLR+A+ET   P +LETDS+R++ L  RD+E +S+ G ++E     +   
Subjt:  VDAAF-CLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAG

Query:  WFIGSNFTFRECNCVAHLLARLAMEDR
          +  +FT R  N +AHLLAR A++ +
Subjt:  WFIGSNFTFRECNCVAHLLARLAMEDR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]4.7e-2135.36Show/hide
Query:  LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAV
        L +W   Y+  FR++ +      G   + A   W PP    +K+N DA+F      A + ++ R+  GQV  +AT + ENI+  D AE + A  GL+LA 
Subjt:  LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAV

Query:  ETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGP
        +    P +LETDS R+F L  +  E++SE G +V  A            NF  RE N  AH+LAR A+  R   +WME+ P
Subjt:  ETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]7.5e-2735.83Show/hide
Query:  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFC
        G  +   +R   D + W      VVLLWAI   RN+  Q   +  S+++L  W   YL  ++ +       L       V  W PP     KVNVDAAF 
Subjt:  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFC

Query:  LESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWF--IGS
         ES  A V V+ RDS G V  TA        D D+ EG A   G+ LAVE     F +ETDS+R+F LL  D  + SE+G+L    ++  L+     +  
Subjt:  LESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWF--IGS

Query:  NFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA
        +FT R  N  AHLLA+LA+     ++W+EE P  +  +LA
Subjt:  NFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.5e-2839.55Show/hide
Query:  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSV
        D +KW   EE  V LWAI   RN+          + N+ DWV  YL  ++ +  G     LL G   R V  W PP    FKVNVDAAF   + +A + +
Subjt:  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSV

Query:  VCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTF--RECNCV
        + RDS   V  +A  F  ++ D   AE LAA  G+ LA+E    PF +ETDS +VF LL+ D E+ SE+G+L   ++R +++   IG  F+F  RE N  
Subjt:  VCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTF--RECNCV

Query:  AHLLARLAMEDRCDRVWMEE
        AH LAR+ M      VW+EE
Subjt:  AHLLARLAMEDRCDRVWMEE

A0A6J1CDQ4 uncharacterized protein LOC1110105335.2e-2633.92Show/hide
Query:  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT-------------REMDLLGGSPSRAVCRWEPPGVDGFKVN
        +LRD +D L W  FEE VV LW++  +RN  +  K++V   +LA WV  Y+  F+ + T             ++   +  + +  +  W P     FK+ 
Subjt:  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT-------------REMDLLGGSPSRAVCRWEPPGVDGFKVN

Query:  VDAAF-CLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAG
         DA+F  ++  A    ++ RD  GQV  +AT + E++   D AE LAA  GLR+A+ET   P +LETDS+R++ L  RD+E +S+ G ++E     +   
Subjt:  VDAAF-CLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAG

Query:  WFIGSNFTFRECNCVAHLLARLAMEDR
          +  +FT R  N +AHLLAR A++ +
Subjt:  WFIGSNFTFRECNCVAHLLARLAMEDR

A0A6J1CIF1 uncharacterized protein LOC1110112372.3e-2135.36Show/hide
Query:  LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAV
        L +W   Y+  FR++ +      G   + A   W PP    +K+N DA+F      A + ++ R+  GQV  +AT + ENI+  D AE + A  GL+LA 
Subjt:  LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAV

Query:  ETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGP
        +    P +LETDS R+F L  +  E++SE G +V  A            NF  RE N  AH+LAR A+  R   +WME+ P
Subjt:  ETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGP

A0A6J1DBJ7 uncharacterized protein LOC1110189733.6e-2735.83Show/hide
Query:  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFC
        G  +   +R   D + W      VVLLWAI   RN+  Q   +  S+++L  W   YL  ++ +       L       V  W PP     KVNVDAAF 
Subjt:  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFC

Query:  LESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWF--IGS
         ES  A V V+ RDS G V  TA        D D+ EG A   G+ LAVE     F +ETDS+R+F LL  D  + SE+G+L    ++  L+     +  
Subjt:  LESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWF--IGS

Query:  NFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA
        +FT R  N  AHLLA+LA+     ++W+EE P  +  +LA
Subjt:  NFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA

A0A803P3X4 Uncharacterized protein5.4e-2329.58Show/hide
Query:  VSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQ-KKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESG
        ++FL+R +   L  + FE ++VL W + Y RN +     K     + +W   +L+ FR+S T + D       R   RW PPG+D FK+NVDA    E+G
Subjt:  VSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQ-KKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESG

Query:  AADVSVVCRDSWGQV-GFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFI-GSNFTF
         A +S V RD  G V    AT   +N+     AE  A A GL+  ++     F +E+D ++   L+QR  E   ++  +V   +R +L    + G +F +
Subjt:  AADVSVVCRDSWGQV-GFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFI-GSNFTF

Query:  RECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLAEKGVHEFPQVGGGRWCRLVGIGLSLVAPEHQANLLFYSCYAASVLLCW
        RE N VAH+LA  A+ ++   +W+   P C    +     +  P+                    H  N +FYS      LLC+
Subjt:  RECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLAEKGVHEFPQVGGGRWCRLVGIGLSLVAPEHQANLLFYSCYAASVLLCW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAAGCATAACACTATTCGGGGGCTAGAGGATGATTCTGGGACATGGATCCAGGAACCAGAGGGGATCATTAGGCAGATTACTGATTATTTTGACCACATTTT
TGCCTCGAGGTGTCCGTCCCTAAGTGAGATCAGCAGTGCGATTGCCGGTGTGGGGGTGTCCTTCCTCCTCCGAGATGTAAAGGATGAGTTGAAATGGGATCGGTTTGAGG
AATGGGTGGTGTTATTATGGGCGATCGGGTACAAGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGATGGCAAATCTGGCAGATTGGGTGGTCGGGTATCTGAACGCG
TTCCGTGATTCGGGGACGAGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCTGTCTGCAGGTGGGAGCCGCCAGGGGTTGATGGGTTCAAGGTGAATGTTGATGC
GGCCTTCTGTCTGGAGAGCGGAGCAGCAGATGTAAGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCACAGCTACGGCCTTCTACGAGAATATCAGAGATACTG
ACTTTGCAGAAGGTTTGGCAGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAG
CGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGATGAGAGGTGTTCTAGCGGGGTGGTTTATCGGCAGCAACTTTACGTTCAGGGAATGCAACTG
CGTAGCCCATCTTTTGGCAAGGTTGGCGATGGAGGACAGATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATG
AGTTTCCCCAAGTTGGGGGTGGGAGGTGGTGTAGGCTAGTGGGCATTGGTTTAAGTCTGGTTGCACCTGAGCATCAGGCTAATTTATTGTTTTACTCTTGTTACGCTGCA
TCTGTTTTGCTCTGCTGGATTGGGTTGAGGCCATGCACCTGCGCATGGGACCTGCTGTCTCTCCTTTTGATTATCTATGGTCTTGTTGAGCATAAGTGGTTAGGGTCTTT
GTTGAAGTTATCATGTTTGATGTCTGGTGTGCTCTCTGCTTTCTCTTATGCTTTTGTTGATAGTGAAGCCCTAGGTTTTGAGATCACCCCTTTTTTGCGCCTTTTAGCTT
CTTTGCGAGGCCTTAGTGCCAGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCGTGAGGTTTCGTGGAGTAATCTTGTTTTGTTCCTGAACTTGTTAGCATGCTTT
AGCTCTTCTCTTAGGCATAAGGGTGCAGGTTGGGGTGTCCAGGCAGGTTTTCTCTGGTGTGTGGAGGGAGTTATTGTGTGTTTTATTTCCTGTGCTAATGTGCTGTATTT
GGTTGTGACCTCTCAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAAGCATAACACTATTCGGGGGCTAGAGGATGATTCTGGGACATGGATCCAGGAACCAGAGGGGATCATTAGGCAGATTACTGATTATTTTGACCACATTTT
TGCCTCGAGGTGTCCGTCCCTAAGTGAGATCAGCAGTGCGATTGCCGGTGTGGGGGTGTCCTTCCTCCTCCGAGATGTAAAGGATGAGTTGAAATGGGATCGGTTTGAGG
AATGGGTGGTGTTATTATGGGCGATCGGGTACAAGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGATGGCAAATCTGGCAGATTGGGTGGTCGGGTATCTGAACGCG
TTCCGTGATTCGGGGACGAGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCTGTCTGCAGGTGGGAGCCGCCAGGGGTTGATGGGTTCAAGGTGAATGTTGATGC
GGCCTTCTGTCTGGAGAGCGGAGCAGCAGATGTAAGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCACAGCTACGGCCTTCTACGAGAATATCAGAGATACTG
ACTTTGCAGAAGGTTTGGCAGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAG
CGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGATGAGAGGTGTTCTAGCGGGGTGGTTTATCGGCAGCAACTTTACGTTCAGGGAATGCAACTG
CGTAGCCCATCTTTTGGCAAGGTTGGCGATGGAGGACAGATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATG
AGTTTCCCCAAGTTGGGGGTGGGAGGTGGTGTAGGCTAGTGGGCATTGGTTTAAGTCTGGTTGCACCTGAGCATCAGGCTAATTTATTGTTTTACTCTTGTTACGCTGCA
TCTGTTTTGCTCTGCTGGATTGGGTTGAGGCCATGCACCTGCGCATGGGACCTGCTGTCTCTCCTTTTGATTATCTATGGTCTTGTTGAGCATAAGTGGTTAGGGTCTTT
GTTGAAGTTATCATGTTTGATGTCTGGTGTGCTCTCTGCTTTCTCTTATGCTTTTGTTGATAGTGAAGCCCTAGGTTTTGAGATCACCCCTTTTTTGCGCCTTTTAGCTT
CTTTGCGAGGCCTTAGTGCCAGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCGTGAGGTTTCGTGGAGTAATCTTGTTTTGTTCCTGAACTTGTTAGCATGCTTT
AGCTCTTCTCTTAGGCATAAGGGTGCAGGTTGGGGTGTCCAGGCAGGTTTTCTCTGGTGTGTGGAGGGAGTTATTGTGTGTTTTATTTCCTGTGCTAATGTGCTGTATTT
GGTTGTGACCTCTCAAGCCTAG
Protein sequenceShow/hide protein sequence
MRKKHNTIRGLEDDSGTWIQEPEGIIRQITDYFDHIFASRCPSLSEISSAIAGVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKVSMANLADWVVGYLNA
FRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQ
RDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLAEKGVHEFPQVGGGRWCRLVGIGLSLVAPEHQANLLFYSCYAA
SVLLCWIGLRPCTCAWDLLSLLLIIYGLVEHKWLGSLLKLSCLMSGVLSAFSYAFVDSEALGFEITPFLRLLASLRGLSARAALGEALHLHAREVSWSNLVLFLNLLACF
SSSLRHKGAGWGVQAGFLWCVEGVIVCFISCANVLYLVVTSQA