; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022032 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022032
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H domain
Genome locationscaffold2:7264036..7268264
RNA-Seq ExpressionSpg022032
SyntenySpg022032
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]2.8e-1127.55Show/hide
Query:  SAGAAVDRCRLKYLEANSKNRDSEAVIRQSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVA
        SAG A +R  +  L  + K   S+   R+  + A  R W  P     K NVDAA +      G+G++ R  +G       + +  ++    AE  A+  A
Subjt:  SAGAAVDRCRLKYLEANSKNRDSEAVIRQSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVA

Query:  LELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDD
         E A+      +++ESD+++ I  IN  L    +++  +  + +L+P F  + F+F  R  N +A +LAKWA  +  D +W+    +WI  ++  D
Subjt:  LELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDD

OVA10548.1 Ribonuclease H domain [Macleaya cordata]1.9e-1229.09Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS--LDVW-SEV
        WSPP    +K N D AW       G+G++ R S G     +  H++  +    AE+ AI  A++ A++ +   + +ESD+++ ++ + +      W ++ 
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS--LDVW-SEV

Query:  ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC
            + +W L   F ++ FN++PR  NRVA +LA+W K S +D  W      W++ ++  D+FLC
Subjt:  ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC

OVA19644.1 Ribonuclease H domain [Macleaya cordata]1.9e-1229.09Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS--LDVW-SEV
        WSPP    +K N D AW       G+G++ R S G     +  H++  +    AE+ AI  A++ A++ +   + +ESD+++ ++ + +      W ++ 
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS--LDVW-SEV

Query:  ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC
            + +W L   F ++ FN++PR  NRVA +LA+W K S +D  W      W++ ++  D+FLC
Subjt:  ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC

XP_030487616.1 uncharacterized protein LOC115704554 [Cannabis sativa]2.5e-1233.55Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT
        W  PP    K NVDAA      + G+G + R SDG   G   K L G F    AE +AI  AL+  +++      VESD+E+ +  +N SL+  S+ +C 
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT

Query:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMV
        V +I  L+  FS      + RN N  A +LA++A   +++  W+E+    I++ V
Subjt:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMV

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.3e-1334Show/hide
Query:  RCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVE
        R WS PP    K NVDAAW     S+G   I R + GS   + +  +D  +    AE   +   L L  +M   KIIV+SD   AI    K L   S V 
Subjt:  RCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVE

Query:  CTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFS
          +  IW++   F  + F +IPRN+N++AD +AK  ++   + +W++ +S
Subjt:  CTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFS

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein1.3e-1127.55Show/hide
Query:  SAGAAVDRCRLKYLEANSKNRDSEAVIRQSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVA
        SAG A +R  +  L  + K   S+   R+  + A  R W  P     K NVDAA +      G+G++ R  +G       + +  ++    AE  A+  A
Subjt:  SAGAAVDRCRLKYLEANSKNRDSEAVIRQSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVA

Query:  LELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDD
         E A+      +++ESD+++ I  IN  L    +++  +  + +L+P F  + F+F  R  N +A +LAKWA  +  D +W+    +WI  ++  D
Subjt:  LELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDD

A0A200Q9T2 Ribonuclease H domain3.9e-1131.33Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGG---ISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDV--WS
        W+PPP    K NVDA+WSS   + G+G+I R   GS  G   +++  LD       AE +AI  A+  A ++  + + +E D++  + F+N       W 
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGG---ISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDV--WS

Query:  EVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFL
               AI  L+  F   V+ ++ R+ NRVAD+LA +A+ + S   W  D   ++V ++  D+ L
Subjt:  EVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFL

A0A2I0B6G4 RNase H domain-containing protein1.7e-1129.52Show/hide
Query:  LGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSE
        L + W+PP     K NVDAA        G+GV+ R S G        ++ G+ E   AE +A++ A  LA +++   I +E DS  AIK I  + +  S 
Subjt:  LGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSE

Query:  VECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC
        +   + AI D +   S  +   I R  NRVA  LA++A   ++  +W ++   +I +++ ++  +C
Subjt:  VECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLC

A0A7J6EJ00 RNase H domain-containing protein5.1e-1130.2Show/hide
Query:  CWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSE---LAIKFINKSLDVWSE
        CWSPPP+  +  N DA+     P  G+G I R   G     + +++ G    L AE +AI++A++LA       I++ SD++    A+K   +    W +
Subjt:  CWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSE---LAIKFINKSLDVWSE

Query:  V--ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIW
        +  +CT+ +       F+ + FNF PR  N VA  LA W++++    +W
Subjt:  V--ECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIW

A0A803NYI1 Uncharacterized protein1.2e-1233.55Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT
        W  PP    K NVDAA      + G+G + R SDG   G   K L G F    AE +AI  AL+  +++      VESD+E+ +  +N SL+  S+ +C 
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT

Query:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMV
        V +I  L+  FS      + RN N  A +LA++A   +++  W+E+    I++ V
Subjt:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.1e-1334.09Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT
        W  PP    K N DA W    P  GIG I R   G    +  + L      L AEL A++ A+    +    +II ESD++  +  +N S D W  ++  
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECT

Query:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAK
        +  I  L+  F EV F F PR  N+VAD++A+
Subjt:  VVAIWDLIPFFSEVVFNFIPRNVNRVADKLAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0632.35Show/hide
Query:  PPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVA
        P +D      DAAW       G G + R     T              L AE IA+ +AL+ A  +   K+ + SDS+  I  I  S    +E    +  
Subjt:  PPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKSLDVWSEVECTVVA

Query:  IWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKS
        I +L   F++V F+F+PR+ NRVAD+LAK + +S S
Subjt:  IWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKS

AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-1231.69Show/hide
Query:  QSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS
        Q  + + GR W PPP    K N DA W+      GIG + R   G    +  + L      L AEL A++ A+    + + + +I ESDS++ I+ +N  
Subjt:  QSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFINKS

Query:  LDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAK
         ++W  ++ T+  +  L+  F+EV F FIPR  N +A+++A+
Subjt:  LDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAK

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-0631.11Show/hide
Query:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFIN-KSLDVWSEVEC
        WSPP  D  K N DA+       +G+G I R S G+     M    G      AE   +  A++ +      K+I E D++   + IN KS +   +   
Subjt:  WSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIKFIN-KSLDVWSEVEC

Query:  TVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWA
          +  W  IP F  + F+F  R  N  AD LAK A
Subjt:  TVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGCGGCCTTGCTGCCAATCTCGACTTTTCCCTTCTTCTCTTGTTCTCTCCGGTCGCTGTCTCCTCCCTCGTTTGCCTGCGATCACGAAGCCGCCGCCGCCTGG
GGGTTTTGCTTGCCGGCGACCTGCTGCTACGAAGTCTCGCTCCGACCGCTGTCTCCTCCCTCGTTTGCCTGCGATCACGAAGCCGCCGCCGCCGCCTGGGGATTTTGCTC
GCCGACGACCTGCTGCTACGAAGTCTCGCCGCTGCGTCCAGTGCTCTCGTCTGGACTGTTCTGACCGCGTTTCAGCCGGCGCCGCCGTGGACCGTTGTCGTTTGAAATAC
CTGGAAGCAAATTCGAAAAACCGTGATTCAGAAGCTGTAATCCGTCAATCGGGCCAACATGCACTTGGTAGATGTTGGTCCCCTCCCCCTGTTGATCACTGGAAATTTAA
TGTCGACGCGGCCTGGTCTTCTCCGATGCCCTCGACTGGAATAGGAGTTATTGGGAGAAAGTCGGATGGGAGTACTGGAGGTATATCTATGAAACATCTTGACGGAAATT
TCGAAGGGCTTGGAGCTGAGTTAATCGCAATCAAGGTGGCTTTGGAGCTGGCGGTACAGATGAGGTGTCATAAGATTATCGTGGAGTCTGATTCTGAGTTGGCTATTAAG
TTCATTAATAAATCCTTAGACGTCTGGAGTGAGGTGGAATGTACTGTGGTGGCTATTTGGGATCTTATTCCATTTTTTTCAGAAGTGGTGTTTAATTTCATTCCTAGAAA
TGTCAATAGAGTAGCAGATAAGCTGGCTAAGTGGGCTAAAATGTCTAAATCTGATGGTATCTGGGTAGAGGATTTTTCAGCTTGGATTGTATCGATGGTCGAGGATGACC
GTTTTCTCTGTGGCCATGTGGCGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGCGGCCTTGCTGCCAATCTCGACTTTTCCCTTCTTCTCTTGTTCTCTCCGGTCGCTGTCTCCTCCCTCGTTTGCCTGCGATCACGAAGCCGCCGCCGCCTGG
GGGTTTTGCTTGCCGGCGACCTGCTGCTACGAAGTCTCGCTCCGACCGCTGTCTCCTCCCTCGTTTGCCTGCGATCACGAAGCCGCCGCCGCCGCCTGGGGATTTTGCTC
GCCGACGACCTGCTGCTACGAAGTCTCGCCGCTGCGTCCAGTGCTCTCGTCTGGACTGTTCTGACCGCGTTTCAGCCGGCGCCGCCGTGGACCGTTGTCGTTTGAAATAC
CTGGAAGCAAATTCGAAAAACCGTGATTCAGAAGCTGTAATCCGTCAATCGGGCCAACATGCACTTGGTAGATGTTGGTCCCCTCCCCCTGTTGATCACTGGAAATTTAA
TGTCGACGCGGCCTGGTCTTCTCCGATGCCCTCGACTGGAATAGGAGTTATTGGGAGAAAGTCGGATGGGAGTACTGGAGGTATATCTATGAAACATCTTGACGGAAATT
TCGAAGGGCTTGGAGCTGAGTTAATCGCAATCAAGGTGGCTTTGGAGCTGGCGGTACAGATGAGGTGTCATAAGATTATCGTGGAGTCTGATTCTGAGTTGGCTATTAAG
TTCATTAATAAATCCTTAGACGTCTGGAGTGAGGTGGAATGTACTGTGGTGGCTATTTGGGATCTTATTCCATTTTTTTCAGAAGTGGTGTTTAATTTCATTCCTAGAAA
TGTCAATAGAGTAGCAGATAAGCTGGCTAAGTGGGCTAAAATGTCTAAATCTGATGGTATCTGGGTAGAGGATTTTTCAGCTTGGATTGTATCGATGGTCGAGGATGACC
GTTTTCTCTGTGGCCATGTGGCGTCTTAA
Protein sequenceShow/hide protein sequence
MEKRPCCQSRLFPSSLVLSGRCLLPRLPAITKPPPPGGFACRRPAATKSRSDRCLLPRLPAITKPPPPPGDFARRRPAATKSRRCVQCSRLDCSDRVSAGAAVDRCRLKY
LEANSKNRDSEAVIRQSGQHALGRCWSPPPVDHWKFNVDAAWSSPMPSTGIGVIGRKSDGSTGGISMKHLDGNFEGLGAELIAIKVALELAVQMRCHKIIVESDSELAIK
FINKSLDVWSEVECTVVAIWDLIPFFSEVVFNFIPRNVNRVADKLAKWAKMSKSDGIWVEDFSAWIVSMVEDDRFLCGHVAS