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Spg022066 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022066
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:11438205..11438777
RNA-Seq ExpressionSpg022066
SyntenySpg022066
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.8e-3251.61Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I EMMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT
                     K H +AR + NK FPYF DL IVFG+DRA G    TP ++ +
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3252.78Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG
                     K HP+ARG+ NK F YF DL IVFG+D+A G
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.8e-3252.78Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG
                     K HP+ARG+ NK F YF DL IVFG+D+A G
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG

XP_024022021.1 uncharacterized protein LOC112091787 [Morus notabilis]5.6e-3447.4Show/hide
Query:  SKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPT-----------CI---
        + VRKH WT +ED  LV+CLL +   G WKADNGTF+ GYLQQ+ K+M EK+P+C ++    ++ RV ILK+QY AI EM+GP            C+   
Subjt:  SKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPT-----------CI---

Query:  -------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK
                K HP A+G+RNK FPY D+L +VFG DRANG+G +   D+  D+DK
Subjt:  -------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK

XP_026662506.2 uncharacterized protein LOC113463064 [Phoenix dactylifera]1.4e-3246Show/hide
Query:  KHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI------------------
        K IWT  ED  LV+CL+++V  GGWK DNG FR G+ Q + ++M++KLP C ++    +E  V +LK+QY AI EM+GP C+                  
Subjt:  KHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI------------------

Query:  ---AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK
            K HPHA G+RNK FPY++DL+IVFGKDRANGEG   P D    ++K
Subjt:  ---AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like8.8e-3352.78Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG
                     K HP+ARG+ NK F YF DL IVFG+D+A G
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein8.8e-3351.61Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I EMMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT
                     K H +AR + NK FPYF DL IVFG+DRA G    TP ++ +
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT

A0A5A7TQ37 Retrotransposon protein1.7e-3142.21Show/hide
Query:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI-----------
        S++++  +H+WT  E+  LV+CL++LV +GGWK+DNGTFR GYL Q++++M EKLP C ++ T+ ++ R+  LKR + AI EM GP CI           
Subjt:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI-----------

Query:  ----------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATD
                   + HP A+G+ NK FPY+D+L  VFG+DRA G    T  DV ++
Subjt:  ----------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATD

A0A5D3BC95 Retrotransposon protein8.8e-3352.78Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG
                     K HP+ARG+ NK F YF DL IVFG+D+A G
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANG

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein8.8e-3351.61Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------
        MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I EMMGP C          
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------

Query:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT
                     K H +AR + NK FPYF DL IVFG+DRA G    TP ++ +
Subjt:  ------------AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27260.1 unknown protein9.1e-0623.72Show/hide
Query:  MASSTSKVRK----HIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEY-----RVMILKRQYGAIVEMMGPTC-
        M  S  K RK    + W+P E ++LVQ L++ +    W+  NGT         L +  + +P  + +   +  Y     R+  LK QY + +++   +  
Subjt:  MASSTSKVRK----HIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEY-----RVMILKRQYGAIVEMMGPTC-

Query:  -------------------IAKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVL
                             K HP+ + +R  +F +FD+L I+FG+  A G+  +
Subjt:  -------------------IAKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGA
CAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGA
TCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGAC
GACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCA
ACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGA
CAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGA
TCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGAC
GACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCA
ACCATGA
Protein sequenceShow/hide protein sequence
MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCIAKVHPHARGMRNKSFPYFD
DLAIVFGKDRANGEGVLTPKDVATDLDKCCMCILGRQP