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Spg022077 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022077
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein CTR9 homolog
Genome locationscaffold2:8883943..8884545
RNA-Seq ExpressionSpg022077
SyntenySpg022077
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO67205.1 Tetratricopeptide TPR-1 [Corchorus capsularis]7.2e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
XP_011660015.1 protein CTR9 homolog isoform X2 [Cucumis sativus]7.2e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
XP_017983098.1 PREDICTED: protein CTR9 homolog [Theobroma cacao]7.2e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
XP_022147582.1 protein CTR9 homolog [Momordica charantia]7.2e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
XP_027175677.1 protein CTR9 homolog [Coffea eugenioides]7.2e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
TrEMBL top hitse value%identityAlignment
A0A068U3G7 TPR_REGION domain-containing protein3.5e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
A0A6J0ZRC6 protein CTR9 homolog isoform X13.5e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
A0A6J0ZRI4 protein CTR9 homolog isoform X23.5e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
A0A6J1HNI2 protein CTR9 homolog isoform X23.5e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
A0A6J1HUB3 protein CTR9 homolog isoform X13.5e-1773.68Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
SwissProt top hitse value%identityAlignment
B5X0I6 Protein CTR9 homolog3.0e-1871.05Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
Arabidopsis top hitse value%identityAlignment
AT2G06210.1 binding2.2e-1971.05Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA
        MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA   F     E F     E S   +DE+YA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA---FGIPNFELF-----EYSECVMDEFYA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGTGTGTACATTCCGGTGCAGAACTCGGAGGAGGAGGTCAGGGTAGCTCTCGATCAACTCCCCAGGGACGCTTCCGACATTCTCGACATACTCAAGGCTGAGCA
AGCTCCGTTAGATCTCTGGCTAATCATCGCGTTCGGAATACCTAATTTCGAACTTTTTGAGTATTCGGAATGCGTAATGGATGAATTTTATGCAGTTTTATGCTTGTGCC
TTACTAATAATTCCCGACCGATGGGACGGTGGCCGAATTCTCTCTCTGTGCGTGTTGTACTTTTTGGGGATATTTTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGTGTGTACATTCCGGTGCAGAACTCGGAGGAGGAGGTCAGGGTAGCTCTCGATCAACTCCCCAGGGACGCTTCCGACATTCTCGACATACTCAAGGCTGAGCA
AGCTCCGTTAGATCTCTGGCTAATCATCGCGTTCGGAATACCTAATTTCGAACTTTTTGAGTATTCGGAATGCGTAATGGATGAATTTTATGCAGTTTTATGCTTGTGCC
TTACTAATAATTCCCGACCGATGGGACGGTGGCCGAATTCTCTCTCTGTGCGTGTTGTACTTTTTGGGGATATTTTTGTGTAA
Protein sequenceShow/hide protein sequence
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAFGIPNFELFEYSECVMDEFYAVLCLCLTNNSRPMGRWPNSLSVRVVLFGDIFV