; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022106 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022106
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonucloprotein
Genome locationscaffold2:6595037..6597590
RNA-Seq ExpressionSpg022106
SyntenySpg022106
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002415 - H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004037 - Ribosomal protein L7Ae conserved site
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR018492 - Ribosomal protein L7Ae/L8/Nhp2 family
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587925.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-6198.44Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

KAG6589855.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6199.22Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_022144838.1 NHP2-like protein 1 isoform X2 [Momordica charantia]1.2e-6199.22Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_022925662.1 NHP2-like protein 1 [Cucurbita moschata]2.7e-6198.44Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_022987905.1 NHP2-like protein 1 [Cucurbita maxima]2.7e-6198.44Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

TrEMBL top hitse value%identityAlignment
A0A6J1CUC5 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1ECA3 Ribonucloprotein1.3e-6198.44Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1H9B8 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1JI38 Ribonucloprotein1.3e-6198.44Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A6J1KF93 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT+EKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

SwissProt top hitse value%identityAlignment
P55769 NHP2-like protein 19.2e-5278.91Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q3B8S0 NHP2-like protein 19.2e-5278.91Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q4R5C6 NHP2-like protein 19.2e-5278.91Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q5XH16 NHP2-like protein 11.7e-5381.25Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT  +VNPKAYPLADAQLT T+LDLVQQ+ANYKQ++KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT  EGSQLK QIQ ++ AIE+LL+
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

Q6P8E9 NHP2-like protein 11.7e-5381.25Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT  +VNPKAYPLADAQLT T+LDLVQQAANYKQ++KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        AC+VT  EGSQLK QIQ L+ +IE+LL+
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.5e-6091.41Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-5263.93Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK------------------------
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDK                        
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK------------------------

Query:  -------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
                                       NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  -------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-6091.41Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT E VNPKAYPLAD+QL+ITI+DLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein6.5e-6192.19Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI
        ACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  ACSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein6.3e-5673.75Show/hide
Query:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLH
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANE                                ATKTLNRGISEFVVMAAD EPLEILLH
Subjt:  MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLH

Query:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
        LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAGAGAAAGTGAATCCCAAAGCATACCCTTTGGCCGACGCCCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAA
GGGCGCCAATGAAGCGACCAAGACTCTGAACAGAGGTATATCTGAGTTCGTTGTGATGGCCGCAGATACCGAGCCGCTCGAAATCCTCCTTCATCTTCCCCTATTAGCCG
AGGATAAGAATGTGCCTTATGTGTTTGTCCCGTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTCACAAGACCTGTTATAGCTTGTTCAGTGACAACAAACGAAGGAAGC
CAATTGAAATCACAAATACAGCAACTCAAGGATGCTATTGAGAAGCTCCTGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAGAGAAAGTGAATCCCAAAGCATACCCTTTGGCCGACGCCCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAA
GGGCGCCAATGAAGCGACCAAGACTCTGAACAGAGGTATATCTGAGTTCGTTGTGATGGCCGCAGATACCGAGCCGCTCGAAATCCTCCTTCATCTTCCCCTATTAGCCG
AGGATAAGAATGTGCCTTATGTGTTTGTCCCGTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTCACAAGACCTGTTATAGCTTGTTCAGTGACAACAAACGAAGGAAGC
CAATTGAAATCACAAATACAGCAACTCAAGGATGCTATTGAGAAGCTCCTGATTTGA
Protein sequenceShow/hide protein sequence
MTSEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGS
QLKSQIQQLKDAIEKLLI