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Spg022178 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022178
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptiontRNA-specific adenosine deaminase 2-like
Genome locationscaffold2:2575563..2577363
RNA-Seq ExpressionSpg022178
SyntenySpg022178
Gene Ontology termsGO:0002100 - tRNA wobble adenosine to inosine editing (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0052717 - tRNA-specific adenosine-34 deaminase activity (molecular function)
InterPro domainsIPR002125 - Cytidine and deoxycytidylate deaminase domain
IPR016193 - Cytidine deaminase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587732.1 tRNA-specific adenosine deaminase TAD2, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2093.22Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVI
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN +
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVI

KAG7021699.1 tRNA-specific adenosine deaminase 2 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-2191.8Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

XP_022933579.1 tRNA-specific adenosine deaminase 2-like [Cucurbita moschata]2.6e-2191.8Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

XP_023006482.1 tRNA-specific adenosine deaminase 2-like [Cucurbita maxima]3.4e-2190.16Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+V+ATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

XP_023530916.1 tRNA-specific adenosine deaminase 2-like [Cucurbita pepo subsp. pepo]2.6e-2191.8Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

TrEMBL top hitse value%identityAlignment
A0A0A0LZX4 CMP/dCMP-type deaminase domain-containing protein2.4e-2088.52Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSS EDCSSDTL FMELAIQQAKLALN+LEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

A0A5D3DXI1 tRNA-specific adenosine deaminase 2 isoform X42.6e-1986.89Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSS EDCSS TL FMELAIQQAKLAL+SLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

A0A6J1C158 tRNA-specific adenosine deaminase 21.8e-2088.52Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSR+DC SDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

A0A6J1F059 tRNA-specific adenosine deaminase 2-like1.3e-2191.8Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+VIATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

A0A6J1KVZ5 tRNA-specific adenosine deaminase 2-like1.6e-2190.16Show/hide
Query:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        MDSSREDCSSDTL FMELAIQQAKLALNSLEVPVGCVIVEDG+V+ATGRNRTTETRN  +H
Subjt:  MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

SwissProt top hitse value%identityAlignment
Q0P4H0 tRNA-specific adenosine deaminase 22.1e-0544.23Show/hide
Query:  FMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS
        +M  A Q A+ ALN+ EVPVGC++V D  V+  GRN   ET+N  +H   ++
Subjt:  FMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS

Q5E9J7 tRNA-specific adenosine deaminase 27.1e-0636.92Show/hide
Query:  DSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS
        D +    + +T ++ME A+Q AK AL++ EVPVGC++V +  V+  GRN   +T+N  +H   ++
Subjt:  DSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS

Q6IDB6 tRNA-specific adenosine deaminase TAD23.9e-1262.5Show/hide
Query:  EDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG VIA+GRNRT ETRN  +H
Subjt:  EDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

Q6P6J0 tRNA-specific adenosine deaminase 21.2e-0539.29Show/hide
Query:  DTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS
        +T ++ME A++ AK AL ++EVPVGC++V +  V+  GRN   +T+N  +H   ++
Subjt:  DTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS

Q7Z6V5 tRNA-specific adenosine deaminase 22.7e-0537.93Show/hide
Query:  SSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS
        + +T ++ME A+  AK AL + EVPVGC++V +  V+  GRN   +T+N  +H   ++
Subjt:  SSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLS

Arabidopsis top hitse value%identityAlignment
AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein2.8e-1362.5Show/hide
Query:  EDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH
        ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG VIA+GRNRT ETRN  +H
Subjt:  EDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQH

AT1G68720.1 tRNA arginine adenosine deaminase8.1e-0543.14Show/hide
Query:  FMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYL
        FM  A+ +AK A ++ EVPVG V+V DG +IA G N   E R+   H   +
Subjt:  FMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCGAGGGAGGATTGCTCTTCCGACACGCTTGAGTTTATGGAGCTTGCAATTCAGCAGGCAAAGCTCGCACTGAACAGCCTTGAAGTGCCTGTGGGCTGTGT
GATAGTTGAAGATGGGGTGGTCATTGCCACTGGAAGAAACCGCACTACTGAGACCCGAAATGTAATCCAACATGGTTCCTATCTCTCTTCCCCTTTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTCGAGGGAGGATTGCTCTTCCGACACGCTTGAGTTTATGGAGCTTGCAATTCAGCAGGCAAAGCTCGCACTGAACAGCCTTGAAGTGCCTGTGGGCTGTGT
GATAGTTGAAGATGGGGTGGTCATTGCCACTGGAAGAAACCGCACTACTGAGACCCGAAATGTAATCCAACATGGTTCCTATCTCTCTTCCCCTTTTTCTTAA
Protein sequenceShow/hide protein sequence
MDSSREDCSSDTLEFMELAIQQAKLALNSLEVPVGCVIVEDGVVIATGRNRTTETRNVIQHGSYLSSPFS