; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022292 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022292
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationscaffold2:13779922..13782071
RNA-Seq ExpressionSpg022292
SyntenySpg022292
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588219.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]9.5e-14891.54Show/hide
Query:  MWPSSSS-RPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWPSSSS RP+AG YG TA    DMVGLMASG+GVG+SVLPLLTGL PSSVGIEE NLMISR GGGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWPSSSS-RPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

XP_022933450.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]4.9e-14489.97Show/hide
Query:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWPS SS+RP+AG YG TA    DMVGLMASG+GVG+SVLPLLTGL PSSVGIEE NLMISR    GGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAG SGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

XP_022974160.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]8.9e-14690.91Show/hide
Query:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWP SSSSRP+AG YG TA    DMVGLMASG+GVG+SVLPLLTG+ PSSVGIEE NLMISR  GGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

XP_022974168.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]6.4e-14489.97Show/hide
Query:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWP SSSSRP+AG YG TA    DMVGLMASG+GVG+SVLPLLTG+ PSSVGIEE NLMISR  GGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        S    MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

XP_023531847.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]2.0e-14590.91Show/hide
Query:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWP SSSSRP+AG YG TA    DMVGLMASG+GVG+SVLPLLTGL PSSVGIEE NLMISR  GGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPI+
Subjt:  SAGRGGGLAGGSGYGNPIN

TrEMBL top hitse value%identityAlignment
A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 12.1e-13284.28Show/hide
Query:  MWPSSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGAG
        MWP  SSRP+   Y  T A  PDMVGLMASGFGVGVSVLPLLTGL PSSVGIEEANLMISRGGG    G  GGGG+ F+GNN DGFG LGGGSSLNSG G
Subjt:  MWPSSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGAG

Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSS
        TCHDCGNQAKKDCSHRRCRSCCKSRGFDC+THVKSTWVPAARRRERQM+ AA+DAAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD SS
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSS

Query:  AADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGG--GGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGSS
        AAD  S K  KLPEQ+RAPAVFKCVRVTAVEGG  GGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP +S+LHL   GDGGSTSSP+IDP+DVYGSS
Subjt:  AADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGG--GGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGSS

Query:  AGRGGGLAGGSGYGNPIN
        A RGGGLAGGSGYGN IN
Subjt:  AGRGGGLAGGSGYGNPIN

A0A6J1EZ30 protein LATERAL ROOT PRIMORDIUM 1-like isoform X22.2e-14289.03Show/hide
Query:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWPS SS+RP+AG YG TA    DMVGLMASG+GVG+SVLPLLTGL PSSVGIEE NLMISR    GGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        S    MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAG SGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X12.4e-14489.97Show/hide
Query:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWPS SS+RP+AG YG TA    DMVGLMASG+GVG+SVLPLLTGL PSSVGIEE NLMISR    GGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWPS-SSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAG SGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X14.3e-14690.91Show/hide
Query:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWP SSSSRP+AG YG TA    DMVGLMASG+GVG+SVLPLLTG+ PSSVGIEE NLMISR  GGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        SAAD MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

A0A6J1IFF1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X23.1e-14489.97Show/hide
Query:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA
        MWP SSSSRP+AG YG TA    DMVGLMASG+GVG+SVLPLLTG+ PSSVGIEE NLMISR  GGGGDGGGGGGGV FHGNNFDGFGFLGGGSSLNSG 
Subjt:  MWP-SSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA

Query:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS
        GTCHDCGNQAKKDC+HRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ+L+AAA AAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDT 
Subjt:  GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTS

Query:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS
        S    MS K+A KLPEQVRAPAVFKCVRVTAVEGGG GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPMLSDLHLGGGGDGGSTSSPIIDP+DVYGS
Subjt:  SAADHMSCKKA-KLPEQVRAPAVFKCVRVTAVEGGG-GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGS

Query:  SAGRGGGLAGGSGYGNPIN
        SAGRGGGLAGGSGYGNPIN
Subjt:  SAGRGGGLAGGSGYGNPIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 23.1e-3243.18Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ----MLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF
        +C DCGNQAKKDC+H RCR+CCKSRGFDC+THV+STW+P ARRRERQ    M T+     + +GG   G +S  K+ R      T    +S+S  P+ S 
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ----MLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF

Query:  DTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYG
                +   +A  P +V + A+F+CV+++ V+ GG G +YAYQ  V IGGH+FKG LYD G E+              GG GGS         D   
Subjt:  DTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYG

Query:  SSAGRGGGLAGGSGYGNPIN
        SSAG GGG       G+P N
Subjt:  SSAGRGGGLAGGSGYGNPIN

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.1e-5651.74Show/hide
Query:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +V   + N + +       +       +HF   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA
        RGFDC+THVKSTWV AARRRERQ++   A+    T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+       +   P QVRA A
Subjt:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA

Query:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG
        VFKCVRVTAVE   G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG

Q9LQZ5 Protein SHI RELATED SEQUENCE 57.1e-2944.13Show/hide
Query:  GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIA--SQTTTNSHTS
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER    A+    +A    SS  T   K+ R  +         H+ 
Subjt:  GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIA--SQTTTNSHTS

Query:  TSNTPTRSFDTSSAADHMSCKKAK-LPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD
           +   +    +A  +   + ++ LP +V +PA+F+CVRV+++E       YAYQ  V IGGH+FKG LYD G E +D
Subjt:  TSNTPTRSFDTSSAADHMSCKKAK-LPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD

Q9SD40 Protein SHI RELATED SEQUENCE 11.4e-2939.64Show/hide
Query:  GGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN
        GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+C+THV+STWVPAA+RRERQ   A                    + +L   ++    H     
Subjt:  GGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN

Query:  TPTRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYD--HGVEARDGFPMLSDLHLGGGGDGGSTSSPI
          + S   +    H   +    P +V + AVF+CVRV++VE   G  E+AYQ  V IGGH+FKG LYD   G     G+ +++      GG GG+    +
Subjt:  TPTRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYD--HGVEARDGFPMLSDLHLGGGGDGGSTSSPI

Query:  IDPTDVYGSSAGRGGGLAGGSG
        I    V  ++A       GG G
Subjt:  IDPTDVYGSSAGRGGGLAGGSG

Q9XGX0 Protein SHORT INTERNODES4.2e-2941.63Show/hide
Query:  SSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP
        S   SG  +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RRERQ   +        GG+        ++   I +++T+ ++T   +  
Subjt:  SSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP

Query:  TRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSD-LHLGGGGDGGSTSSPIIDP
        T   +  +            P +V + AVF+CVRV++V+      EYAY+  V IGGHVFKG LYD G   R      S  L+L   G   S+SSP +  
Subjt:  TRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSD-LHLGGGGDGGSTSSPIIDP

Query:  TD-VYGSSA
         + V GS++
Subjt:  TD-VYGSSA

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related1.0e-3039.64Show/hide
Query:  GGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN
        GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+C+THV+STWVPAA+RRERQ   A                    + +L   ++    H     
Subjt:  GGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSN

Query:  TPTRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYD--HGVEARDGFPMLSDLHLGGGGDGGSTSSPI
          + S   +    H   +    P +V + AVF+CVRV++VE   G  E+AYQ  V IGGH+FKG LYD   G     G+ +++      GG GG+    +
Subjt:  TPTRSFDTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYD--HGVEARDGFPMLSDLHLGGGGDGGSTSSPI

Query:  IDPTDVYGSSAGRGGGLAGGSG
        I    V  ++A       GG G
Subjt:  IDPTDVYGSSAGRGGGLAGGSG

AT4G36260.1 Lateral root primordium (LRP) protein-related2.2e-3343.18Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ----MLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF
        +C DCGNQAKKDC+H RCR+CCKSRGFDC+THV+STW+P ARRRERQ    M T+     + +GG   G +S  K+ R      T    +S+S  P+ S 
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQ----MLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF

Query:  DTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYG
                +   +A  P +V + A+F+CV+++ V+ GG G +YAYQ  V IGGH+FKG LYD G E+              GG GGS         D   
Subjt:  DTSSAADHMSCKKAKLPEQVRAPAVFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYG

Query:  SSAGRGGGLAGGSGYGNPIN
        SSAG GGG       G+P N
Subjt:  SSAGRGGGLAGGSGYGNPIN

AT5G12330.1 Lateral root primordium (LRP) protein-related7.5e-5851.74Show/hide
Query:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +V   + N + +       +       +HF   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA
        RGFDC+THVKSTWV AARRRERQ++   A+    T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+       +   P QVRA A
Subjt:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA

Query:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG
        VFKCVRVTAVE   G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG

AT5G12330.2 Lateral root primordium (LRP) protein-related7.5e-5851.74Show/hide
Query:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +V   + N + +       +       +HF   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA
        RGFDC+THVKSTWV AARRRERQ++   A+    T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+       +   P QVRA A
Subjt:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA

Query:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG
        VFKCVRVTAVE   G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG

AT5G12330.4 Lateral root primordium (LRP) protein-related7.5e-5851.74Show/hide
Query:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS
        A+   +GV V+PLLT G    +V   + N + +       +       +HF   N    G     S   SGA    TC DCGNQAKK+C  RRCR+CCKS
Subjt:  ASGFGVGVSVLPLLT-GLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKS

Query:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA
        RGFDC+THVKSTWV AARRRERQ++   A+    T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+       +   P QVRA A
Subjt:  RGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA

Query:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG
        VFKCVRVTAVE   G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Subjt:  VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGG---DGGSTSSPIIDPTD-VYGSSAGRGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCCTCCTCCTCCTCCAGACCCATGGCCGGCGTCTACGGGCAAACGGCGGCGGCGGCGCCGGACATGGTCGGTCTCATGGCCTCTGGCTTCGGCGTCGGCGTAAG
CGTTTTGCCTCTCCTTACTGGTCTCGGTCCGTCCAGCGTGGGAATTGAAGAGGCCAATTTGATGATCAGCCGCGGCGGCGGCGGCGGAGGTGACGGCGGCGGAGGGGGTG
GCGGGGTTCATTTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGGACTTGTCATGACTGTGGGAACCAAGCTAAG
AAAGACTGCAGCCACCGACGGTGCCGGAGCTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGGAGGAGAGAACGGCA
GATGCTGACCGCCGCCGCAGACGCCGCCGCCGCCACCGGCGGTACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCGTCACAGACAACCACCAATT
CTCACACTTCCACTTCCAACACTCCAACACGAAGCTTCGACACTTCCTCCGCTGCAGATCATATGAGTTGTAAGAAGGCAAAGCTGCCGGAACAAGTACGAGCGCCGGCG
GTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGCGGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTCAAAGGTTATTTATA
TGACCATGGAGTGGAAGCTAGGGATGGGTTTCCAATGTTGTCGGATTTGCATCTCGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCCACCGATG
TTTATGGAAGCTCCGCCGGCCGCGGCGGAGGACTGGCCGGGGGATCTGGCTATGGTAATCCAATAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCCTCCTCCTCCTCCAGACCCATGGCCGGCGTCTACGGGCAAACGGCGGCGGCGGCGCCGGACATGGTCGGTCTCATGGCCTCTGGCTTCGGCGTCGGCGTAAG
CGTTTTGCCTCTCCTTACTGGTCTCGGTCCGTCCAGCGTGGGAATTGAAGAGGCCAATTTGATGATCAGCCGCGGCGGCGGCGGCGGAGGTGACGGCGGCGGAGGGGGTG
GCGGGGTTCATTTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGGACTTGTCATGACTGTGGGAACCAAGCTAAG
AAAGACTGCAGCCACCGACGGTGCCGGAGCTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGGAGGAGAGAACGGCA
GATGCTGACCGCCGCCGCAGACGCCGCCGCCGCCACCGGCGGTACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCGTCACAGACAACCACCAATT
CTCACACTTCCACTTCCAACACTCCAACACGAAGCTTCGACACTTCCTCCGCTGCAGATCATATGAGTTGTAAGAAGGCAAAGCTGCCGGAACAAGTACGAGCGCCGGCG
GTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGCGGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTCAAAGGTTATTTATA
TGACCATGGAGTGGAAGCTAGGGATGGGTTTCCAATGTTGTCGGATTTGCATCTCGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCCACCGATG
TTTATGGAAGCTCCGCCGGCCGCGGCGGAGGACTGGCCGGGGGATCTGGCTATGGTAATCCAATAAATTGA
Protein sequenceShow/hide protein sequence
MWPSSSSRPMAGVYGQTAAAAPDMVGLMASGFGVGVSVLPLLTGLGPSSVGIEEANLMISRGGGGGGDGGGGGGGVHFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAK
KDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQMLTAAADAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADHMSCKKAKLPEQVRAPA
VFKCVRVTAVEGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMLSDLHLGGGGDGGSTSSPIIDPTDVYGSSAGRGGGLAGGSGYGNPIN