; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022347 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022347
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome locationscaffold2:9751733..9754938
RNA-Seq ExpressionSpg022347
SyntenySpg022347
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033232.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]9.0e-2543.54Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCE---------------WILRAY--------------HKQATFTF
        +SK+ SNF + V DMFS+K   + +++AIA+RDNFQ+  VKSN+++ ++QC +E+C+               W+L  Y              H+ ATFT 
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCE---------------WILRAY--------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
        IKD IK KI +A SEL TPKDI+ +IR+E+ L I YQ AWRARE+ +
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

KAA0039149.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]5.3e-2545.77Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFSSK + +  I+AI +RDNFQ+  VKSN+++ ++QC +E+C+W LRA                              H+QATF  
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA
        IKD IK KIS+A S+L TPK+I+ FI  E+ L ISYQKAWRA
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA

KAA0060121.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]1.4e-2544.9Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFS+K + +  ++AIAIRDNFQ+  VKSN+++ ++QC +E+C+W LRA                              ++QATFT 
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
         KD IK KIS+A  EL T KDI+ FIR+E+ L ISYQKAWRA E+ +
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

XP_008452162.1 PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo]1.8e-2844.52Show/hide
Query:  GRFFHTIDVSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------
        GRFF  +D+SK+ SNF + V DMFS+K + +  ++ IA+RDNFQ+ T+KSN ++ ++QCV+E+C+W L A                              
Subjt:  GRFFHTIDVSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------

Query:  HKQATFTFIKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
        H+QATFT IKD IK KI +A S+L TPKDI+ FI  E+ L I YQKAWRAR + +
Subjt:  HKQATFTFIKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

XP_008463110.1 PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo]5.3e-2545.77Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFSSK + +  I+AI +RDNFQ+  VKSN+++ ++QC +E+C+W LRA                              H+QATF  
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA
        IKD IK KIS+A S+L TPK+I+ FI  E+ L ISYQKAWRA
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA

TrEMBL top hitse value%identityAlignment
A0A1S3BT85 uncharacterized protein LOC1034932678.5e-2944.52Show/hide
Query:  GRFFHTIDVSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------
        GRFF  +D+SK+ SNF + V DMFS+K + +  ++ IA+RDNFQ+ T+KSN ++ ++QCV+E+C+W L A                              
Subjt:  GRFFHTIDVSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------

Query:  HKQATFTFIKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
        H+QATFT IKD IK KI +A S+L TPKDI+ FI  E+ L I YQKAWRAR + +
Subjt:  HKQATFTFIKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

A0A1S3CIV7 uncharacterized protein LOC1035013362.6e-2545.77Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFSSK + +  I+AI +RDNFQ+  VKSN+++ ++QC +E+C+W LRA                              H+QATF  
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA
        IKD IK KIS+A S+L TPK+I+ FI  E+ L ISYQKAWRA
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA

A0A5A7TCZ3 Protein FAR-RED ELONGATED HYPOCOTYL 3-like2.6e-2545.77Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFSSK + +  I+AI +RDNFQ+  VKSN+++ ++QC +E+C+W LRA                              H+QATF  
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA
        IKD IK KIS+A S+L TPK+I+ FI  E+ L ISYQKAWRA
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRA

A0A5A7V2Y2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like6.7e-2644.9Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF
        +SK+ SNF + V DMFS+K + +  ++AIAIRDNFQ+  VKSN+++ ++QC +E+C+W LRA                              ++QATFT 
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAY-----------------------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
         KD IK KIS+A  EL T KDI+ FIR+E+ L ISYQKAWRA E+ +
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

A0A5D3BGB6 Protein FAR-RED ELONGATED HYPOCOTYL 3-like4.4e-2543.54Show/hide
Query:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCE---------------WILRAY--------------HKQATFTF
        +SK+ SNF + V DMFS+K   + +++AIA+RDNFQ+  VKSN+++ ++QC +E+C+               W+L  Y              H+ ATFT 
Subjt:  VSKMSSNFEICVDDMFSSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCE---------------WILRAY--------------HKQATFTF

Query:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI
        IKD IK KI +A SEL TPKDI+ +IR+E+ L I YQ AWRARE+ +
Subjt:  IKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCCCTAGTTTTCCATAGCTCTTCCCTCGCGCCTGAAGAGAGAACAGAGCTAGGACCCTTCACCTTGATATGTACGGAAGTGGTTGCCAACAAGAACATAGTTCA
TCTGACATCAAGATGTACTGATAACCACGAGTTTTACAGATTATTCCACATACTTCGCACGCTTTTTCCAGTATCGTCTTCATCCCATTCACGAGTTTTCCGGCGTTTAG
TTCAGAAAATCGATTACTGCAGTATCGACATAGGTGAAGGGCGTTTTTTCCACACCATTGATGTTTCGAAGATGTCTTCCAATTTTGAGATTTGCGTAGATGACATGTTC
TCCTCGAAGCTTGTGTTACAGAATGCTATTCGAGCTATTGCCATTAGAGACAACTTCCAATTCAAAACAGTCAAATCTAACCGTGACATTTTTGTTGTGCAATGTGTGGT
TGAGGATTGTGAGTGGATCCTTAGAGCATATCACAAGCAAGCGACATTTACATTTATTAAGGATTGCATTAAGCGGAAGATTAGCATTGCGACTAGTGAATTACCCACTC
CTAAAGACATTATATCATTCATCCGATCGGAATATGACTTGCGTATTAGTTACCAAAAGGCTTGGCGTGCTCGGGAAAGCTGCATTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCCCTAGTTTTCCATAGCTCTTCCCTCGCGCCTGAAGAGAGAACAGAGCTAGGACCCTTCACCTTGATATGTACGGAAGTGGTTGCCAACAAGAACATAGTTCA
TCTGACATCAAGATGTACTGATAACCACGAGTTTTACAGATTATTCCACATACTTCGCACGCTTTTTCCAGTATCGTCTTCATCCCATTCACGAGTTTTCCGGCGTTTAG
TTCAGAAAATCGATTACTGCAGTATCGACATAGGTGAAGGGCGTTTTTTCCACACCATTGATGTTTCGAAGATGTCTTCCAATTTTGAGATTTGCGTAGATGACATGTTC
TCCTCGAAGCTTGTGTTACAGAATGCTATTCGAGCTATTGCCATTAGAGACAACTTCCAATTCAAAACAGTCAAATCTAACCGTGACATTTTTGTTGTGCAATGTGTGGT
TGAGGATTGTGAGTGGATCCTTAGAGCATATCACAAGCAAGCGACATTTACATTTATTAAGGATTGCATTAAGCGGAAGATTAGCATTGCGACTAGTGAATTACCCACTC
CTAAAGACATTATATCATTCATCCGATCGGAATATGACTTGCGTATTAGTTACCAAAAGGCTTGGCGTGCTCGGGAAAGCTGCATTAAATGA
Protein sequenceShow/hide protein sequence
MLPLVFHSSSLAPEERTELGPFTLICTEVVANKNIVHLTSRCTDNHEFYRLFHILRTLFPVSSSSHSRVFRRLVQKIDYCSIDIGEGRFFHTIDVSKMSSNFEICVDDMF
SSKLVLQNAIRAIAIRDNFQFKTVKSNRDIFVVQCVVEDCEWILRAYHKQATFTFIKDCIKRKISIATSELPTPKDIISFIRSEYDLRISYQKAWRARESCIK