CuGenDBv2

Gene ID	Spg022360
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
Genome location	scaffold2:4225121..4228744
RNA-Seq Expression	Spg022360
Synteny	Spg022360
Gene Ontology terms	GO:0006289 - nucleotide-excision repair (biological process) GO:0005634 - nucleus (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	IPR018973 - DEAD/DEAH-box helicase, putative

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ98237.1 putative ATP-dependent helicase YprA isoform X1 [Cucumis melo var. makuwa]

1.1e-29

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

XP_008453310.1 PREDICTED: uncharacterized ATP-dependent helicase YprA isoform X1 [Cucumis melo]

1.1e-29

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

XP_011648610.1 uncharacterized protein LOC101220817 [Cucumis sativus]

2.4e-29

68.57

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVS----------KSALSPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S              S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVS----------KSALSPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

XP_016901422.1 PREDICTED: uncharacterized ATP-dependent helicase YprA isoform X2 [Cucumis melo]

1.1e-29

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

XP_022135057.1 uncharacterized protein LOC111007140 isoform X2 [Momordica charantia]

4.1e-29

67.62

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMS+Q   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        K+YCR
Subjt:  KAYCR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LUR5 Uncharacterized protein

1.2e-29

68.57

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVS----------KSALSPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S              S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVS----------KSALSPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

A0A1S3BX31 uncharacterized ATP-dependent helicase YprA isoform X1

5.2e-30

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

A0A1S4DZJ9 uncharacterized ATP-dependent helicase YprA isoform X2

5.2e-30

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

A0A5A7US68 Putative ATP-dependent helicase YprA isoform X1

5.2e-30

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

A0A5D3BGJ3 Putative ATP-dependent helicase YprA isoform X1

5.2e-30

69.52

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Query:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE
        RIICNMSDLAPEC NPH+TRYFPERILLYDQHPGGTGMSLQ   +          L+ S   L          S ACHEYNEVLHKDAASLIIKGVLDAE
Subjt:  RIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKSAL----------SPACHEYNEVLHKDAASLIIKGVLDAE

Query:  KAYCR
        KAYCR
Subjt:  KAYCR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G08110.1 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases

2.6e-21

48.18

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Query:  LITVVSYRRIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQ-----------NFSLLAAAQKRPAALIVSKSALSPACHEYNEVLHKDAASL
        L+ VV   R+ CN SD+APECPNP E RYFP RIL+YD+HPGGTG+S +              LL + +K P      K A +  C  YNE+LHK AA +
Subjt:  LITVVSYRRIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQ-----------NFSLLAAAQKRPAALIVSKSALSPACHEYNEVLHKDAASL

Query:  IIKGVLDAEK
        I++GVLDA++
Subjt:  IIKGVLDAEK

Sequences

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CDS sequence

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ATGAAGACCAAACTTCTCTACTGGTCAACTTATTTAGATTGCCTCAATGCTGCTGAAAGGGTGCAGAAAAGGACCCGTTATATAACTTCGCTGCTATGTTGTTTAGCAGA
TTTTGAATCTCAGCTCATCACTGTAGTTTCTTACAGACGCATTATATGCAACATGTCTGACTTGGCTCCTGAATGTCCAAATCCTCATGAGACTCGCTATTTTCCAGAAA
GAATTTTGTTGTATGATCAACATCCTGGAGGAACTGGTATGTCACTACAGAACTTCTCACTTCTTGCTGCTGCTCAGAAGAGACCGGCTGCCCTAATTGTGTCCAAGTCT
GCTTTAAGTCCGGCCTGTCATGAATACAACGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATTAAGGGTGTTCTGGATGCAGAGAAAGCATATTGCAGGTAA

mRNA sequence

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Protein sequence

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MKTKLLYWSTYLDCLNAAERVQKRTRYITSLLCCLADFESQLITVVSYRRIICNMSDLAPECPNPHETRYFPERILLYDQHPGGTGMSLQNFSLLAAAQKRPAALIVSKS
ALSPACHEYNEVLHKDAASLIIKGVLDAEKAYCR

Spg022360 (gene) of Sponge gourd (cylindrica) v1 genome