; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022371 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022371
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlycine--tRNA ligase
Genome locationscaffold2:5676261..5677260
RNA-Seq ExpressionSpg022371
SyntenySpg022371
Gene Ontology termsGO:0006426 - glycyl-tRNA aminoacylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004820 - glycine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002310 - Glycine-tRNA ligase, alpha subunit
IPR006194 - Glycine-tRNA synthetase, heterodimeric


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140508.3 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis sativus]3.2e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

XP_008459797.1 PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis melo]4.2e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

XP_016902503.1 PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucumis melo]4.2e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

XP_022156971.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Momordica charantia]4.2e-3251.43Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLP+ VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

XP_038874261.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispida]4.2e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

TrEMBL top hitse value%identityAlignment
A0A0A0KFM2 Glycine--tRNA ligase1.6e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

A0A1S3CB07 Glycine--tRNA ligase2.0e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

A0A1S4E2Q4 Glycine--tRNA ligase2.0e-3252Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYL----TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

A0A6J1DWK5 Glycine--tRNA ligase2.0e-3251.43Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGSQQLLP+ VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L        H   ++      E HSLLALGLAIPAYDQ+LKASHAFN LDSR FIGV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLT----EPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

A0A6J1IFY6 Glycine--tRNA ligase3.9e-3150.58Show/hide
Query:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL
        +LS LG D  A  +    F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQ+GSQQLLPV VEITYGLERILMLLQ             
Subjt:  ALSRLG-DAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITL

Query:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQ-GRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        +   +L ++    + ++ L              +  E HSLLALGL IPAYDQ+LKASHAFN LDSR F+GV
Subjt:  LAIEDLSIDQGLGVISFILVFFVCFGCHLQ-GRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

SwissProt top hitse value%identityAlignment
A4J7D0 Glycine--tRNA ligase alpha subunit1.7e-2340Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDL----SIDQ---G
        F+   W+S           LGAWG+GWE+W+DGME+TQFTYFQQ G     PV  EITYGLER+ M +QQK  +     +  +   D+     ++Q    
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDL----SIDQ---G

Query:  LGVISFILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
          V +  ++F       L   Y  E + +L  GL +PAYD +LK SH FN LD+R  I V
Subjt:  LGVISFILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

B2V9P8 Glycine--tRNA ligase alpha subunit5.7e-2443.87Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDL--SIDQGLGVIS
        F+  +W+S           LGAWG+GWE+W+DGMEITQFTYFQQAGS  L  + VEITYGLERI   LQ K  +        L   D+    ++   + +
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDL--SIDQGLGVIS

Query:  FILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        F +V  V F       Y  E + L++L L IPAYD  LK SH FN LD+R  + V
Subjt:  FILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

Q10XW9 Glycine--tRNA ligase alpha subunit3.7e-2341.56Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISF-
        F+   W+S           LGAWG+GWE+W+DGMEITQFTYFQQ GS    PV +EITYGLER+ M LQ+   I   A    +   D+ +   +   S+ 
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISF-

Query:  ILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
               F  +L G Y  E   L+   L +P+ D +LK SH+FN LD+R  I V
Subjt:  ILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

Q8L785 Glycine--tRNA ligase, chloroplastic/mitochondrial 26.3e-3150.65Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISFI
        F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGS  L PV VEITYGLERI+MLLQ+            +   +L ++    + S+ 
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISFI

Query:  LVFFVCFGCHLQGRYL-TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        L             Y   E  SLLALGL IPAYDQ+LK SHAFN LD+R FIGV
Subjt:  LVFFVCFGCHLQGRYL-TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV

Q8RH45 Glycine--tRNA ligase alpha subunit3.7e-2339.31Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGL--GVIS
        F+  +W+S           LGAWG+GWE+W+DGMEITQFTYFQQ G  +L  + VEITYGLER+ + +Q K             + DL   +G+  G + 
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGL--GVIS

Query:  FILVF--------FVCFGCHLQ--GRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGVFQSMLVIL
        +   F              H +    Y  E   +L  GL +PAYD +LK SHAFN LDSR  I   + M  IL
Subjt:  FILVF--------FVCFGCHLQ--GRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGVFQSMLVIL

Arabidopsis top hitse value%identityAlignment
AT3G48110.1 glycine-tRNA ligases4.5e-3250.65Show/hide
Query:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISFI
        F+   W+S          +LGAWG+GWEIW+DGMEITQFTYFQQAGS  L PV VEITYGLERI+MLLQ+            +   +L ++    + S+ 
Subjt:  FISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLLAIEDLSIDQGLGVISFI

Query:  LVFFVCFGCHLQGRYL-TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV
        L             Y   E  SLLALGL IPAYDQ+LK SHAFN LD+R FIGV
Subjt:  LVFFVCFGCHLQGRYL-TEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTCCTTTATCCAATGGACAATTCGCATTGTCAAGATTAGGAGACGCTGGAGCTCAATCATTGCTGGAAAAATTCTTTATTTCAAAGGAATGGGATTCTCTTTT
TGAAAATTCAAGGGCGTCAAGGCAGATACTTGGAGCTTGGGGAATGGGATGGGAAATCTGGATAGATGGGATGGAGATTACCCAATTCACTTACTTTCAGCAGGCTGGAA
GTCAACAATTGTTGCCCGTAGTTGTTGAAATCACTTATGGTCTTGAACGTATCCTCATGTTACTGCAGCAAAAGCCATTTATCAATATATCGGCTGAAATAACCCTCTTG
GCTATTGAAGATCTCTCAATAGACCAAGGATTGGGTGTTATATCATTCATACTTGTGTTTTTTGTGTGTTTTGGTTGTCATTTGCAGGGTAGATACCTTACAGAACCTCA
CTCCTTGCTTGCTTTAGGATTAGCGATCCCTGCGTATGATCAGATTTTGAAGGCATCCCATGCTTTCAACAAATTGGACTCAAGAAGCTTCATTGGGGTATTTCAGAGCA
TGCTCGTTATTTTGATCAGATGCGAAGCTCTTTTTGAAGATGGTTCCTTTTTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTCCTTTATCCAATGGACAATTCGCATTGTCAAGATTAGGAGACGCTGGAGCTCAATCATTGCTGGAAAAATTCTTTATTTCAAAGGAATGGGATTCTCTTTT
TGAAAATTCAAGGGCGTCAAGGCAGATACTTGGAGCTTGGGGAATGGGATGGGAAATCTGGATAGATGGGATGGAGATTACCCAATTCACTTACTTTCAGCAGGCTGGAA
GTCAACAATTGTTGCCCGTAGTTGTTGAAATCACTTATGGTCTTGAACGTATCCTCATGTTACTGCAGCAAAAGCCATTTATCAATATATCGGCTGAAATAACCCTCTTG
GCTATTGAAGATCTCTCAATAGACCAAGGATTGGGTGTTATATCATTCATACTTGTGTTTTTTGTGTGTTTTGGTTGTCATTTGCAGGGTAGATACCTTACAGAACCTCA
CTCCTTGCTTGCTTTAGGATTAGCGATCCCTGCGTATGATCAGATTTTGAAGGCATCCCATGCTTTCAACAAATTGGACTCAAGAAGCTTCATTGGGGTATTTCAGAGCA
TGCTCGTTATTTTGATCAGATGCGAAGCTCTTTTTGAAGATGGTTCCTTTTTTGGTTAA
Protein sequenceShow/hide protein sequence
MEIPLSNGQFALSRLGDAGAQSLLEKFFISKEWDSLFENSRASRQILGAWGMGWEIWIDGMEITQFTYFQQAGSQQLLPVVVEITYGLERILMLLQQKPFINISAEITLL
AIEDLSIDQGLGVISFILVFFVCFGCHLQGRYLTEPHSLLALGLAIPAYDQILKASHAFNKLDSRSFIGVFQSMLVILIRCEALFEDGSFFG