; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022404 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022404
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA-binding protein 8A
Genome locationscaffold2:13105321..13117447
RNA-Seq ExpressionSpg022404
SyntenySpg022404
Gene Ontology termsGO:0008380 - RNA splicing (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0035145 - exon-exon junction complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR008111 - RNA-binding motif protein 8
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR033744 - RBM8, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139049.1 RNA-binding protein Y14 [Cucumis sativus]6.0e-5096.26Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRKN RP RERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

XP_022154366.1 RNA-binding protein Y14A [Momordica charantia]4.1e-5198.13Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

XP_022961208.1 RNA-binding protein Y14-like [Cucurbita moschata]1.1e-5199.07Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEI+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

XP_022988215.1 RNA-binding protein Y14A-like [Cucurbita maxima]1.1e-5199.07Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEI+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

XP_038880227.1 RNA-binding protein Y14A [Benincasa hispida]3.5e-5096.26Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFG+FGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRKNTRP RERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

TrEMBL top hitse value%identityAlignment
A0A0A0M2V3 RRM domain-containing protein2.9e-5096.26Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRKN RP RERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

A0A1S3BNH9 RNA-binding protein 8A-B2.9e-5096.26Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRKN RP RERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

A0A6J1DNH7 RNA-binding protein Y14A2.0e-5198.13Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

A0A6J1HB67 RNA-binding protein Y14-like5.3e-5299.07Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEI+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

A0A6J1JIZ0 RNA-binding protein Y14A-like5.3e-5299.07Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWIILVTGVHEEAQEDDLQNAFGEFGEI+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRRY
        RSPRRRY
Subjt:  RSPRRRY

SwissProt top hitse value%identityAlignment
B7FAL5 RNA-binding protein Y14A1.1e-4177.78Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWI+LVTGVHEEAQEDDL N F +FG++KNLHLNLDRRTGFVKGYALIEYE FEEA+ AI A+DG+ELLTQII+VDWAFS+GP++R+N R    RRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RS-PRRRY
        RS PRRRY
Subjt:  RS-PRRRY

F4I9J7 RNA-binding protein Y141.9e-3872.32Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP-----IRRKNTRPT
        S+EGWIILV+GVHEE QE+D+ NAFG+FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP      RRKN+R  
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP-----IRRKNTRPT

Query:  RERRSRSPRRRY
        R +RSRSPRRRY
Subjt:  RERRSRSPRRRY

Q28BZ1 RNA-binding protein 8A1.4e-3061.32Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        S+EGWI+ VTGVHEEA E+D+ + FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q I+VDW F  GP   K  R +  RRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRR
        RSP RR
Subjt:  RSPRRR

Q6ATR0 RNA-binding protein Y14B1.2e-3262.26Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        SIEGWI+LV+GV E+A+EDDL N F +FG +K+LHLNL+RRTG+ KGYAL+EYE+FEEA+ AI AM+G++LLT+ + VDWAFS GPI++  +     RRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRR
        R+P RR
Subjt:  RSPRRR

Q9DF42 RNA-binding protein 8A-A1.9e-3060.38Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS
        S+EGWI+ VTGVHEEA E+D+ + FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q ++VDW F  GP   K  R +  RRS
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRS

Query:  RSPRRR
        RSP RR
Subjt:  RSPRRR

Arabidopsis top hitse value%identityAlignment
AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-3972.32Show/hide
Query:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP-----IRRKNTRPT
        S+EGWIILV+GVHEE QE+D+ NAFG+FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP      RRKN+R  
Subjt:  SIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP-----IRRKNTRPT

Query:  RERRSRSPRRRY
        R +RSRSPRRRY
Subjt:  RERRSRSPRRRY

AT3G11400.1 eukaryotic translation initiation factor 3G14.6e-0829.33Show/hide
Query:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA
        + VT + E+ +E DL   F  FG +  +++ +D++TG  +G+  + + + E+A++AI+ ++G      I+ V+WA
Subjt:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA

AT3G11400.2 eukaryotic translation initiation factor 3G14.6e-0829.33Show/hide
Query:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA
        + VT + E+ +E DL   F  FG +  +++ +D++TG  +G+  + + + E+A++AI+ ++G      I+ V+WA
Subjt:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA

AT5G61030.1 glycine-rich RNA-binding protein 33.5e-0832Show/hide
Query:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA
        + + G+     ED L+ AF ++GE+ +  + LDR TG  +G+  + + + E A  AI A+DG +L  +++ V++A
Subjt:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA

AT5G64200.1 ortholog of human splicing factor SC351.0e-0732.71Show/hide
Query:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRER
        +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  
Subjt:  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRER

Query:  RSRSPRR
        RSRSPRR
Subjt:  RSRSPRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTTGGATGTTGTCTTCCTGGAAATGTTGCTTACATGGGTGTCTGCACATGTCTTTTGTGGTCTTCCTCTTGGAAGTCTACAATGATCTGCTTTTTGGTGATGAA
ATGCTTTCCTCTGGAGCTCTTTCAATCGAACATTTTAACTATTCTCATTGCTCTCTCTCTTAAAGATTTAAACCGGGAAGCTCTTTTATTGCAGGTTTTAAGGCTCTTTC
AGATGGACAGGTACACCCTGATTGATGGTGCCTGTCCCACATTGCTTGGCTTTCTGAGCATGTCCTTGGTACTCTGTTCTATTGAAGGATGGATCATTCTGGTAACTGGT
GTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGACCGTCGTACTGGGTTTGTCAAGGGATA
TGCACTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATG
GACCCATCAGAAGGAAGAACACAAGGCCTACTCGGGAACGACGTTCGAGGAGCCCTAGGAGGAGATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTTGGATGTTGTCTTCCTGGAAATGTTGCTTACATGGGTGTCTGCACATGTCTTTTGTGGTCTTCCTCTTGGAAGTCTACAATGATCTGCTTTTTGGTGATGAA
ATGCTTTCCTCTGGAGCTCTTTCAATCGAACATTTTAACTATTCTCATTGCTCTCTCTCTTAAAGATTTAAACCGGGAAGCTCTTTTATTGCAGGTTTTAAGGCTCTTTC
AGATGGACAGGTACACCCTGATTGATGGTGCCTGTCCCACATTGCTTGGCTTTCTGAGCATGTCCTTGGTACTCTGTTCTATTGAAGGATGGATCATTCTGGTAACTGGT
GTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGACCGTCGTACTGGGTTTGTCAAGGGATA
TGCACTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATG
GACCCATCAGAAGGAAGAACACAAGGCCTACTCGGGAACGACGTTCGAGGAGCCCTAGGAGGAGATATTGA
Protein sequenceShow/hide protein sequence
MIVGCCLPGNVAYMGVCTCLLWSSSWKSTMICFLVMKCFPLELFQSNILTILIALSLKDLNREALLLQVLRLFQMDRYTLIDGACPTLLGFLSMSLVLCSIEGWIILVTG
VHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRSRSPRRRY