; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022420 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022420
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDynein light chain, type 1/2
Genome locationscaffold2:5207335..5208451
RNA-Seq ExpressionSpg022420
SyntenySpg022420
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587507.1 Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-7873.82Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDNLSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        + FTSKSLALSLK+  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

KAG6587511.1 hypothetical protein SDJN03_16076, partial [Cucurbita argyrosperma subsp. sororia]1.8e-7375.51Show/hide
Query:  MVGPRTVQKVAKKPNENP---------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADM
        MVGPRTV K+AKKPNE P         NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADM
Subjt:  MVGPRTVQKVAKKPNENP---------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADM

Query:  PPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFGWLILTGIRWGLRAGMALYCGEEFWVICDTFSGWISVLFHGSKALHSALQNHCTKSQLE
        PPFMQIHAVDCARK HDSM+ FTSKSLALSLK+  D  +           AGMALYCGE+FW+ICDTFSGWI V F GSKALHSALQNHCTKSQLE
Subjt:  PPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFGWLILTGIRWGLRAGMALYCGEEFWVICDTFSGWISVLFHGSKALHSALQNHCTKSQLE

XP_022933432.1 uncharacterized protein LOC111440848 [Cucurbita moschata]1.8e-7873.82Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDNLSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        + FTSKSLALSLK+  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

XP_022972898.1 uncharacterized protein LOC111471403 [Cucurbita maxima]1.4e-7873.82Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASHQTSHQ LLSPP  MD HRR QPT       AAA   SPHPTSPK +P TPLSDSDNLSKSHPPSPKV  +SLHS PKMVGPRTV K AKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        EKFTSKSLALSLK+  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

XP_038879954.1 uncharacterized protein LOC120071657 [Benincasa hispida]7.0e-7875.54Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASH TS     S   SMDPHRRNQP A  A+A    A  SPHPTSPK +PTTPLSDSDNLSKS+PPSPKVDSISLHS PKMVGP TVQKVAKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEE+ ERMINCI AKEREMKQLL+EHEHLTRRLSVSLSSSRSGRR+SIC SQIQLADVFANNGV++VSADMPPFMQIHAVDCARKTHDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        EKFTSKSLAL+LKK  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

TrEMBL top hitse value%identityAlignment
A0A1S3BVI8 uncharacterized protein LOC1034939579.9e-6265.24Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MA+H T+     S   SMDPH RNQP  A A A    A  SPHPTSPK +P TPLSDSDNLSKSHPPSP             VGPRT QKVAKK NE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                N SEE+ E MINCI AKEREMKQLL+EHEH+TRRLS+SLSSSRSGRRRS  GSQIQL DVFA NG ++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        EKFTSKSLAL+LKK  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

A0A5A7UPX5 Dynein light chain, type 1/29.9e-6265.24Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MA+H T+     S   SMDPH RNQP  A A A    A  SPHPTSPK +P TPLSDSDNLSKSHPPSP             VGPRT QKVAKK NE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                N SEE+ E MINCI AKEREMKQLL+EHEH+TRRLS+SLSSSRSGRRRS  GSQIQL DVFA NG ++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        EKFTSKSLAL+LKK  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

A0A6J1E0M2 uncharacterized protein LOC1114297424.1e-6869.23Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASH+TS        SS+DP+RRN P AA+A++    AA SP+PTS K +P TPLSDSD LSKSHPPS           PKMVGPRTVQ VAKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSG-RRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDS
                NDSEEK ERMINCI AKEREMKQLL+EHEHLTRRLSVSLSSSRSG RRRSICGSQI+LADVFANNGV++VSADMPPFMQIHAVDCARK HDS
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSG-RRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDS

Query:  MEKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        MEKFTSKSLAL+LKK  D  +G  W  + G  +G
Subjt:  MEKFTSKSLALSLKKNVD--FG--WLILTGIRWG

A0A6J1EZR5 uncharacterized protein LOC1114408488.9e-7973.82Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDNLSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        + FTSKSLALSLK+  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

A0A6J1IBG1 uncharacterized protein LOC1114714036.8e-7973.82Show/hide
Query:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-
        MASHQTSHQ LLSPP  MD HRR QPT       AAA   SPHPTSPK +P TPLSDSDNLSKSHPPSPKV  +SLHS PKMVGPRTV K AKKPNE P 
Subjt:  MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP-

Query:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM
                NDSEEK ERMINCI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM
Subjt:  --------NDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSM

Query:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG
        EKFTSKSLALSLK+  D  +G  W  + G  +G
Subjt:  EKFTSKSLALSLKKNVD--FG--WLILTGIRWG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20110.1 Dynein light chain type 1 family protein2.4e-0729.11Show/hide
Query:  SKPKMVGPRTVQKVAKKPNENPNDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSG-----RRRSI------CGSQIQLADVFANNGVR
        SK  ++ P++  K+   P   P+ S++++E     + + +     ++++   L    S +    + G      R+S+        ++I+ A       VR
Subjt:  SKPKMVGPRTVQKVAKKPNENPNDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSG-----RRRSI------CGSQIQLADVFANNGVR

Query:  LVSADMPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFG----WLILTGIRWG
        +++ADMP FMQ HA  CAR T DS+EKF+SK +A +LKK  D G    W  + G  +G
Subjt:  LVSADMPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFG----WLILTGIRWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCATCAAACTTCACACCAACCCCTATTATCACCTCCCTCATCCATGGACCCCCACCGTAGAAACCAACCCACCGCCGCCTCCGCCTCCGCCGCCGCCGCCGC
TGCCGCTGCCTCTCCACACCCAACATCACCAAAACCAAATCCCACAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTTGATTCCA
TTTCTCTTCACTCCAAGCCCAAAATGGTCGGCCCCAGAACAGTGCAAAAAGTAGCCAAAAAACCCAACGAAAACCCCAATGATTCCGAAGAAAAACTCGAACGCATGATC
AACTGTATCAACGCCAAAGAAAGGGAAATGAAACAGCTCTTACAGGAACACGAACATCTCACTCGCAGGCTCTCTGTTTCGCTGTCTTCATCGCGGAGTGGAAGAAGAAG
ATCAATCTGTGGCTCACAGATTCAGCTAGCAGACGTTTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCG
CGAGAAAGACCCACGACAGTATGGAAAAGTTCACTTCAAAATCGCTCGCGTTGAGTCTGAAGAAGAATGTTGATTTTGGTTGGTTGATTTTGACAGGAATTCGATGGGGT
TTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACACATTCAGTGGGTGGATTTCTGTACTTTTCCATGGCTCAAAAGCTTTACATTCTGC
TCTTCAAAACCACTGTACAAAGAGCCAATTAGAAATACTGAATCGCTGTGATCATGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCATCAAACTTCACACCAACCCCTATTATCACCTCCCTCATCCATGGACCCCCACCGTAGAAACCAACCCACCGCCGCCTCCGCCTCCGCCGCCGCCGCCGC
TGCCGCTGCCTCTCCACACCCAACATCACCAAAACCAAATCCCACAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTTGATTCCA
TTTCTCTTCACTCCAAGCCCAAAATGGTCGGCCCCAGAACAGTGCAAAAAGTAGCCAAAAAACCCAACGAAAACCCCAATGATTCCGAAGAAAAACTCGAACGCATGATC
AACTGTATCAACGCCAAAGAAAGGGAAATGAAACAGCTCTTACAGGAACACGAACATCTCACTCGCAGGCTCTCTGTTTCGCTGTCTTCATCGCGGAGTGGAAGAAGAAG
ATCAATCTGTGGCTCACAGATTCAGCTAGCAGACGTTTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCG
CGAGAAAGACCCACGACAGTATGGAAAAGTTCACTTCAAAATCGCTCGCGTTGAGTCTGAAGAAGAATGTTGATTTTGGTTGGTTGATTTTGACAGGAATTCGATGGGGT
TTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACACATTCAGTGGGTGGATTTCTGTACTTTTCCATGGCTCAAAAGCTTTACATTCTGC
TCTTCAAAACCACTGTACAAAGAGCCAATTAGAAATACTGAATCGCTGTGATCATGTTTAG
Protein sequenceShow/hide protein sequence
MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENPNDSEEKLERMI
NCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFGWLILTGIRWG
LRAGMALYCGEEFWVICDTFSGWISVLFHGSKALHSALQNHCTKSQLEILNRCDHV