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Spg022446 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022446
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:9854730..9856835
RNA-Seq ExpressionSpg022446
SyntenySpg022446
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.7e-1534.59Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N++A+W  D   GG GW++RD  G +I A  +  + E  ++ LE  A+ EGL  +  R      + +ESD L+ +  L++ C+D +EI 
Subjt:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]5.3e-1726.07Show/hide
Query:  ELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWVCSDYWNWCCGNLIEEDLGKKIL---------------------------------------ANV
        E T H +WECK+ K +WI+C P     F + R +W   +YW W      EE+  + ++                                        N+
Subjt:  ELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWVCSDYWNWCCGNLIEEDLGKKIL---------------------------------------ANV

Query:  DRRTHQNHEI----------WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVES
         R++   H I          W PP    WK N+DA+W  D    G GW++RD  G +I  G +  + E  ++ LE  A+ EGL  +  R      + +ES
Subjt:  DRRTHQNHEI----------WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVES

Query:  DCLDLVRCLNK
        D L+ +  L++
Subjt:  DCLDLVRCLNK

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.2e-1436.17Show/hide
Query:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD
        +T  N   W PP    W  N+DASW+D    GG GW++R   G ++ AG +  +    V +LEA A+ EGL  L    G    L +E+D  ++   LN+ 
Subjt:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD

Query:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         EDL++   +V+ IL+L  +  +L+F    R  NG AHS+A
Subjt:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.9e-1533.81Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE
        W PP    WK N+DA+W  D   GG GW++RD  G +I A  +  + E  ++ LE  A+ EGL  +       ++ E      +ESD L+ +  L++ C+
Subjt:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE

Query:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        D +EI  L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

XP_023915286.1 uncharacterized protein LOC112026812 [Quercus suber]2.1e-1329.17Show/hide
Query:  IHAIWECKMAKKVWIDCIPQILM--------LFQLRRDDW-------------VCSDYWN----WCCGNLIEED---LGKK--ILAN-VDRRTH------
        +HA+WECK A+ VW  C  ++L         + QL  D W             +C   W+       G L++E    +G+   +LA  V+ RTH      
Subjt:  IHAIWECKMAKKVWIDCIPQILM--------LFQLRRDDW-------------VCSDYWN----WCCGNLIEED---LGKK--ILAN-VDRRTH------

Query:  -QNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLS-CLYGRFGDNLELEVESDCLDLVRCLNKDC
          + + W PP   R+K N D +   D+   G G ++R+  G ++ A              E  A   GL   +   FGD   L VE D L++++ +  + 
Subjt:  -QNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLS-CLYGRFGDNLELEVESDCLDLVRCLNKDC

Query:  EDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         D S + NLVD +  LA  L ++ F+   R  NGVAHS+A
Subjt:  EDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134128.3e-1634.59Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N++A+W  D   GG GW++RD  G +I A  +  + E  ++ LE  A+ EGL  +  R      + +ESD L+ +  L++ C+D +EI 
Subjt:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1D4B6 uncharacterized protein LOC1110171811.0e-1337.59Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK
        W PP    WK N DA+W D L  GG GW+VRDS G  I A                KA+ + L+   G     +++E+ESDCL++V  +NK    L+E+ 
Subjt:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIK

Query:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         +V+ I     +L +  FKH     NGVAH IA
Subjt:  NLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.6e-1726.07Show/hide
Query:  ELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWVCSDYWNWCCGNLIEEDLGKKIL---------------------------------------ANV
        E T H +WECK+ K +WI+C P     F + R +W   +YW W      EE+  + ++                                        N+
Subjt:  ELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWVCSDYWNWCCGNLIEEDLGKKIL---------------------------------------ANV

Query:  DRRTHQNHEI----------WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVES
         R++   H I          W PP    WK N+DA+W  D    G GW++RD  G +I  G +  + E  ++ LE  A+ EGL  +  R      + +ES
Subjt:  DRRTHQNHEI----------WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVES

Query:  DCLDLVRCLNK
        D L+ +  L++
Subjt:  DCLDLVRCLNK

A0A6J1DNV9 uncharacterized protein LOC1110224032.0e-1436.17Show/hide
Query:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD
        +T  N   W PP    W  N+DASW+D    GG GW++R   G ++ AG +  +    V +LEA A+ EGL  L    G    L +E+D  ++   LN+ 
Subjt:  RTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKD

Query:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
         EDL++   +V+ IL+L  +  +L+F    R  NG AHS+A
Subjt:  CEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

A0A6J1DSV1 uncharacterized protein LOC1110236081.4e-1533.81Show/hide
Query:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE
        W PP    WK N+DA+W  D   GG GW++RD  G +I A  +  + E  ++ LE  A+ EGL  +       ++ E      +ESD L+ +  L++ C+
Subjt:  WVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELE------VESDCLDLVRCLNKDCE

Query:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        D +EI  L++ I  +  ++ ++S +H SR  N VAH +A
Subjt:  DLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.1e-0426.19Show/hide
Query:  CRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVI
        CR K N DAS ++   + G GW++R+S G+++  G+   +G       E  A+   +      FG   ++  E D  ++ R +N    D   +K+ +D I
Subjt:  CRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVI

Query:  LDLAPNLGVLSFKHCSRIQNGVAHSI
            P+     F    R QN  A ++
Subjt:  LDLAPNLGVLSFKHCSRIQNGVAHSI

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0925.15Show/hide
Query:  SDYWNWCCGNLIEEDLGKKILANVDRRTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCL
        +D   W    +  E       A+  R T      W PP   + K N DAS ++   + G GW++R+S G++I  G+   +G       E   +   +   
Subjt:  SDYWNWCCGNLIEEDLGKKILANVDRRTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCL

Query:  YGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA
        YG FG + ++  E D   + R +N    +   +++ +D I    P+   + F    R QNG A  +A
Subjt:  YGRFGDNLELEVESDCLDLVRCLNKDCEDLSEIKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTAGGTTTAAATCACGCTCCCACATCTAGTCATAGCTCTCTTGAGTTTGAAAAGAATGATCTAGTTTCTGATGGATCAAATGACTCGTCTATCGATATGAATTT
ATTGTTGGATTTAGACCATGGAGAATGCGAGTCTGGTTATGCTTCAACTTTCAATCTAAACTCTCCATGTTCATCTGATGAGGATAAAGAGGTGTGTAACTATCCAGTGT
TTAGATATGAGACTGGTATGGAGGTTGTTATATTTCAAGTAAGAATGAAATTTAGCACCAAGGAGGTGTTAAAGGAAGCTATTAAGGAATATGCTATGAAGGACTCATTT
AATGTGAAAATGGAGGGAGATTCAACACAACAACCTCAACTTTCTAGAGACCCACAACGGCCTCAATCTTCTGGATCTATACATAAACGACAAGTGGAGGCATCAACCTT
CAATTTTTGTTTCAGTCAACTATTCTACCTTCTTCAGAATATTGAATTGACCATTCATGCTATCTGGGAGTGTAAGATGGCTAAGAAGGTCTGGATTGATTGTATTCCTC
AGATTCTTATGCTTTTTCAATTGCGCAGGGATGATTGGGTTTGCTCGGACTATTGGAACTGGTGTTGTGGCAACTTAATCGAAGAGGATTTGGGGAAAAAGATACTCGCC
AACGTAGATCGGAGAACCCACCAGAATCACGAGATTTGGGTCCCTCCTCGCCCTTGCCGATGGAAATTTAATTCAGATGCATCCTGGAATGATGATTTGAAGATCGGCGG
ATTTGGTTGGGTGGTGCGTGATTCCGGCGGATCTTTGATCTGTGCGGGCCTGCAATCTTCAAAAGGGGAGTGGCCAGTTAGTGTTCTCGAAGCCAAAGCGATGTGGGAAG
GGTTGTCTTGCCTATATGGAAGATTTGGAGATAACCTGGAATTAGAAGTTGAATCGGATTGCTTGGATCTCGTCCGCTGCTTGAACAAAGATTGTGAAGACTTGTCTGAA
ATCAAGAATTTGGTTGATGTCATTTTAGATCTGGCTCCCAATTTAGGAGTGCTATCTTTCAAGCACTGCTCTAGAATTCAGAATGGGGTGGCTCACTCAATTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCTAGGTTTAAATCACGCTCCCACATCTAGTCATAGCTCTCTTGAGTTTGAAAAGAATGATCTAGTTTCTGATGGATCAAATGACTCGTCTATCGATATGAATTT
ATTGTTGGATTTAGACCATGGAGAATGCGAGTCTGGTTATGCTTCAACTTTCAATCTAAACTCTCCATGTTCATCTGATGAGGATAAAGAGGTGTGTAACTATCCAGTGT
TTAGATATGAGACTGGTATGGAGGTTGTTATATTTCAAGTAAGAATGAAATTTAGCACCAAGGAGGTGTTAAAGGAAGCTATTAAGGAATATGCTATGAAGGACTCATTT
AATGTGAAAATGGAGGGAGATTCAACACAACAACCTCAACTTTCTAGAGACCCACAACGGCCTCAATCTTCTGGATCTATACATAAACGACAAGTGGAGGCATCAACCTT
CAATTTTTGTTTCAGTCAACTATTCTACCTTCTTCAGAATATTGAATTGACCATTCATGCTATCTGGGAGTGTAAGATGGCTAAGAAGGTCTGGATTGATTGTATTCCTC
AGATTCTTATGCTTTTTCAATTGCGCAGGGATGATTGGGTTTGCTCGGACTATTGGAACTGGTGTTGTGGCAACTTAATCGAAGAGGATTTGGGGAAAAAGATACTCGCC
AACGTAGATCGGAGAACCCACCAGAATCACGAGATTTGGGTCCCTCCTCGCCCTTGCCGATGGAAATTTAATTCAGATGCATCCTGGAATGATGATTTGAAGATCGGCGG
ATTTGGTTGGGTGGTGCGTGATTCCGGCGGATCTTTGATCTGTGCGGGCCTGCAATCTTCAAAAGGGGAGTGGCCAGTTAGTGTTCTCGAAGCCAAAGCGATGTGGGAAG
GGTTGTCTTGCCTATATGGAAGATTTGGAGATAACCTGGAATTAGAAGTTGAATCGGATTGCTTGGATCTCGTCCGCTGCTTGAACAAAGATTGTGAAGACTTGTCTGAA
ATCAAGAATTTGGTTGATGTCATTTTAGATCTGGCTCCCAATTTAGGAGTGCTATCTTTCAAGCACTGCTCTAGAATTCAGAATGGGGTGGCTCACTCAATTGCCTGA
Protein sequenceShow/hide protein sequence
MHLGLNHAPTSSHSSLEFEKNDLVSDGSNDSSIDMNLLLDLDHGECESGYASTFNLNSPCSSDEDKEVCNYPVFRYETGMEVVIFQVRMKFSTKEVLKEAIKEYAMKDSF
NVKMEGDSTQQPQLSRDPQRPQSSGSIHKRQVEASTFNFCFSQLFYLLQNIELTIHAIWECKMAKKVWIDCIPQILMLFQLRRDDWVCSDYWNWCCGNLIEEDLGKKILA
NVDRRTHQNHEIWVPPRPCRWKFNSDASWNDDLKIGGFGWVVRDSGGSLICAGLQSSKGEWPVSVLEAKAMWEGLSCLYGRFGDNLELEVESDCLDLVRCLNKDCEDLSE
IKNLVDVILDLAPNLGVLSFKHCSRIQNGVAHSIA