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Spg022475 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022475
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold2:11833795..11838826
RNA-Seq ExpressionSpg022475
SyntenySpg022475
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]8.0e-0670Show/hide
Query:  SWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
        S VRVA  PTQYA+ FGDK EW AG+  TQ+GIHSFP LG
Subjt:  SWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-0656.6Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
        L SLG   L   ++RVA  PTQYA+ F DK EW AG++ TQ+GIHSFP LG +
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]9.5e-0773.68Show/hide
Query:  VRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDK EW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-0454.72Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
        L SLG   L   ++R+   PTQYA+ FGDK EW AG++TTQ+GIH FP LG +
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]8.0e-0656.36Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEVDE
        L SLG   L   ++RVA  PTQYA+ F DK EW AG++ TQ+GIH FP LG VD+
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEVDE
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class3.9e-0670Show/hide
Query:  SWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
        S VRVA  PTQYA+ FGDK EW AG+  TQ+GIHSFP LG
Subjt:  SWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein3.0e-0656.6Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
        L SLG   L   ++RVA  PTQYA+ F DK EW AG++ TQ+GIHSFP LG +
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein4.6e-0773.68Show/hide
Query:  VRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDK EW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLG
A0A5D3D7C0 Gag/pol protein9.6e-0554.72Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
        L SLG   L   ++R+   PTQYA+ FGDK EW AG++TTQ+GIH FP LG +
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEV
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-943.9e-0656.36Show/hide
Query:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEVDE
        L SLG   L   ++RVA  PTQYA+ F DK EW AG++ TQ+GIH FP LG VD+
Subjt:  LRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEVDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTTTGAAGCCGCAAGCTGCCTCATCCGAACCCCCTCTCTCTCGCGTGTTCCAGCCTCCGCCGACAGCCCCTTCTTCTTCCTCTTTGCGTGCCTGCAGTTGGGCGT
CCCTCCTCCGGCGGTTGCTCCTCTTGTTCGTCCCCTCCGACGTGGTGTTCGCAGCCCTGTTCATCTCCACGGCGTGGTGTTCGCGGCAGTGCAGAGCGGTGTTATCCGGC
AAGCAGTCTCAGGCGTTCTTTCCGTATCCGGCGTTTTGGGTGTAGAATCTCCAAGTTTCAGCATCCTTGAGCGGGTTTCGTCATTGGGCCTGTCTCGCTCTGGTTGTGAT
GGTTCGAAGTGCCTTGTAGCTTGTGATTGGGCAGTGTGGAATATAGGAGTGTTTATCTGCTTTTCAGGGGTGTTGTGTTGGGATAGGTGGTACTTGACGACATCAGGCGA
GTGGCGATGGCAATTCTTGGCTAGGCTATGGGATACAGCTGCAAAACATGTCCTTAGAAGTCTAGGATCAAGCTTTCTAGTCTCATCATGGGTGAGAGTGGCCAATACGC
CGACTCAATATGCCTTCTTTTTTGGGGACAAGATCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACTTTTAGGAGAAGTAGATGAGTAC
ACTCGTGAAGGATTGACTTACCGGTATGGGTTTATATCCATGGACACAAAAATGTTCTACAGTGAGAAGAGTTCAGCTGCGTTTCTCTTCATAACCGACGTTCTAGAAGC
AGATCTTCAAGTTTCAGCCTCTTTGAGCGAGTTCGTCATTGGGTACCCGTGGCGTTTGGAGGTCGAATTGTCGAATTTGAGCAATTTTGGACTGCTGGACAGCAAGCTGT
GGTTCTGTTTTGGCTTGCTTAAGAACCTTGGAGTTACGGAATTTCCTGAAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTTTGAAGCCGCAAGCTGCCTCATCCGAACCCCCTCTCTCTCGCGTGTTCCAGCCTCCGCCGACAGCCCCTTCTTCTTCCTCTTTGCGTGCCTGCAGTTGGGCGT
CCCTCCTCCGGCGGTTGCTCCTCTTGTTCGTCCCCTCCGACGTGGTGTTCGCAGCCCTGTTCATCTCCACGGCGTGGTGTTCGCGGCAGTGCAGAGCGGTGTTATCCGGC
AAGCAGTCTCAGGCGTTCTTTCCGTATCCGGCGTTTTGGGTGTAGAATCTCCAAGTTTCAGCATCCTTGAGCGGGTTTCGTCATTGGGCCTGTCTCGCTCTGGTTGTGAT
GGTTCGAAGTGCCTTGTAGCTTGTGATTGGGCAGTGTGGAATATAGGAGTGTTTATCTGCTTTTCAGGGGTGTTGTGTTGGGATAGGTGGTACTTGACGACATCAGGCGA
GTGGCGATGGCAATTCTTGGCTAGGCTATGGGATACAGCTGCAAAACATGTCCTTAGAAGTCTAGGATCAAGCTTTCTAGTCTCATCATGGGTGAGAGTGGCCAATACGC
CGACTCAATATGCCTTCTTTTTTGGGGACAAGATCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACTTTTAGGAGAAGTAGATGAGTAC
ACTCGTGAAGGATTGACTTACCGGTATGGGTTTATATCCATGGACACAAAAATGTTCTACAGTGAGAAGAGTTCAGCTGCGTTTCTCTTCATAACCGACGTTCTAGAAGC
AGATCTTCAAGTTTCAGCCTCTTTGAGCGAGTTCGTCATTGGGTACCCGTGGCGTTTGGAGGTCGAATTGTCGAATTTGAGCAATTTTGGACTGCTGGACAGCAAGCTGT
GGTTCTGTTTTGGCTTGCTTAAGAACCTTGGAGTTACGGAATTTCCTGAAGGTTAA
Protein sequenceShow/hide protein sequence
MPFEAASCLIRTPSLSRVPASADSPFFFLFACLQLGVPPPAVAPLVRPLRRGVRSPVHLHGVVFAAVQSGVIRQAVSGVLSVSGVLGVESPSFSILERVSSLGLSRSGCD
GSKCLVACDWAVWNIGVFICFSGVLCWDRWYLTTSGEWRWQFLARLWDTAAKHVLRSLGSSFLVSSWVRVANTPTQYAFFFGDKIEWEAGDMTTQEGIHSFPLLGEVDEY
TREGLTYRYGFISMDTKMFYSEKSSAAFLFITDVLEADLQVSASLSEFVIGYPWRLEVELSNLSNFGLLDSKLWFCFGLLKNLGVTEFPEG