CuGenDBv2

Gene ID	Spg022491
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal protein
Genome location	scaffold2:6457646..6460008
RNA-Seq Expression	Spg022491
Synteny	Spg022491
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021783.1 rpmJ [Cucurbita argyrosperma subsp. argyrosperma]

7.7e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVRRRGRVY+YCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEI PSHS R GLASLIPQKH+PTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

4.1e-44

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVYVYCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+SPR GLASLIPQKH+PT +FGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

2.6e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVRRRGRVY+YCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEILPSHS R GLASLIPQKH+PTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

XP_022971996.1 uncharacterized protein LOC111470644 [Cucurbita maxima]

7.7e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVRRRGRVY+YCSSNPKHKQRQGLSTFASE PSPSL SRSEVK++ILPSHS R GLASLIPQKH+PTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

2.6e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVYVYCSSNPKHKQRQGLSTFASEGP PSL SRSEVKQE+LPSHS R GLASLIPQKH+PTML GWRMGLASILLKK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

4.1e-42

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+R+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS   RMGLASLIPQK++PTML GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

2.0e-44

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVYVYCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+SPR GLASLIPQKH+PT +FGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

1.3e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVRRRGRVY+YCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEILPSHS R GLASLIPQKH+PTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

A0A6J1I4R0 Ribosomal protein

3.7e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVRRRGRVY+YCSSNPKHKQRQGLSTFASE PSPSL SRSEVK++ILPSHS R GLASLIPQKH+PTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

4.8e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVYVYCSSNPKHKQRQGLST ASEGPSP L   SEVKQEILPSHS R GLASL+PQKH+PTMLFGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

B3DFA8 50S ribosomal protein L36

1.5e-09

84.21

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MKVRASVKKMCE CR +RRRGRV V C SNPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

5.2e-10

76.32

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

B7K227 50S ribosomal protein L36

1.5e-09

84.21

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MKVRASVKKMCE CR +RRRGRV V C SNPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

1.0e-10

81.58

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MKVRASVKKMC+ CR +RRRGRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

5.2e-10

76.32

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

3.3e-28

63.11

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLK
        MKVR+SVKKMCEFC+TV+RRGRVYV CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT  FGWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

3.3e-28

63.11

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLK
        MKVR+SVKKMCEFC+TV+RRGRVYV CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT  FGWR GLASIL K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

3.5e-09

71.05

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Query:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG
        MK+RASV+K+CE CR +RRRGR+ V C SNP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAGGCGTCGAGGTCGGGTTTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCA
AGGCCTATCAACGTTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTATCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCCCGCGAATGGGACTGGCTTCTC
TTATCCCCCAAAAGCATCAGCCAACAATGTTGTTTGGCTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAGCACAATTAG

mRNA sequence

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Protein sequence

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MKVRASVKKMCEFCRTVRRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMGLASILLKKHN

Spg022491 (gene) of Sponge gourd (cylindrica) v1 genome