; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022589 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022589
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:6294508..6298067
RNA-Seq ExpressionSpg022589
SyntenySpg022589
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010666976.1 PREDICTED: uncharacterized protein LOC104884079 [Beta vulgaris subsp. vulgaris]8.7e-1238.85Show/hide
Query:  QSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDED
        QS   WNPP   CWKIN DAS  ATEG+ GLG I RD  G    A+ +  +  W   + EAKA+  G+   L       + VIESDCL +I  L K    
Subjt:  QSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDED

Query:  LTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR
        L++L   +  I  ++ N   L + H  R  N V++ LA+
Subjt:  LTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.3e-1536.03Show/hide
Query:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTE
        A W PP  + WK+N++A+W A    GG+GWI+RD  G  I AS + ++    I  LE  A+ EGL ++     RP    +ESD L  I  L+++ +D TE
Subjt:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTE

Query:  LKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR
        +   +E I ++ ++  ++  +H  R  N+VA+ LAR
Subjt:  LKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]5.1e-1233.08Show/hide
Query:  PHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELKVCVE
        P + WK+N+DA+W+A +G GGLGWI+R+       A  +++ +   I  LE  A+W G+ +V  V+    S +IES+ L  I  +    +++TE+   V+
Subjt:  PHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELKVCVE

Query:  VILKLAQNQGVLHFQHCPRLQNRVANALAREGA
         I    +   +  FQH  R  N VA  +A   A
Subjt:  VILKLAQNQGVLHFQHCPRLQNRVANALAREGA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1335.14Show/hide
Query:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNV-TERPQSFVIESDCLNLIRNLNK
        + L ++  W PPP   W +N+DASW+ +   GG+GWI+R   G  + A  + V+    + +LEA A+ EGL ++ N+   RP    IE+D   +   LN+
Subjt:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNV-TERPQSFVIESDCLNLIRNLNK

Query:  EDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGL
        + EDLT+    VE IL L  +  +L F    R  N  A++LA+  + L
Subjt:  EDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.8e-1534.51Show/hide
Query:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERP------QSFVIESDCLNLIRNLNKE
        A W PP  + WK+N+DA+W A    GG+GWI+RD  G  I A  + ++    I  LE  A+ EGL ++     RP      +   +ESD L  I  L+++
Subjt:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERP------QSFVIESDCLNLIRNLNKE

Query:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR
         +D TE+   +E I ++ ++  ++  +H  R  N+VA+ LAR
Subjt:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.3e-1636.03Show/hide
Query:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTE
        A W PP  + WK+N++A+W A    GG+GWI+RD  G  I AS + ++    I  LE  A+ EGL ++     RP    +ESD L  I  L+++ +D TE
Subjt:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTE

Query:  LKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR
        +   +E I ++ ++  ++  +H  R  N+VA+ LAR
Subjt:  LKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR

A0A6J1D4B6 uncharacterized protein LOC1110171814.2e-1234.44Show/hide
Query:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKE
        +NL     W PP    WK+N DA+W  +   GGLGWIVRDS G  I A                KAL + L       E      +ESDCL ++  +NK 
Subjt:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKE

Query:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLSRHL
           LTE+ + VE I K  ++  +  F+H P   N VA+ +AR       H+
Subjt:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLSRHL

A0A6J1D5W1 uncharacterized protein LOC1110173292.5e-1233.08Show/hide
Query:  PHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELKVCVE
        P + WK+N+DA+W+A +G GGLGWI+R+       A  +++ +   I  LE  A+W G+ +V  V+    S +IES+ L  I  +    +++TE+   V+
Subjt:  PHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELKVCVE

Query:  VILKLAQNQGVLHFQHCPRLQNRVANALAREGA
         I    +   +  FQH  R  N VA  +A   A
Subjt:  VILKLAQNQGVLHFQHCPRLQNRVANALAREGA

A0A6J1DNV9 uncharacterized protein LOC1110224037.7e-1435.14Show/hide
Query:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNV-TERPQSFVIESDCLNLIRNLNK
        + L ++  W PPP   W +N+DASW+ +   GG+GWI+R   G  + A  + V+    + +LEA A+ EGL ++ N+   RP    IE+D   +   LN+
Subjt:  ENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNV-TERPQSFVIESDCLNLIRNLNK

Query:  EDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGL
        + EDLT+    VE IL L  +  +L F    R  N  A++LA+  + L
Subjt:  EDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGL

A0A6J1DSV1 uncharacterized protein LOC1110236081.8e-1534.51Show/hide
Query:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERP------QSFVIESDCLNLIRNLNKE
        A W PP  + WK+N+DA+W A    GG+GWI+RD  G  I A  + ++    I  LE  A+ EGL ++     RP      +   +ESD L  I  L+++
Subjt:  ALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERP------QSFVIESDCLNLIRNLNKE

Query:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR
         +D TE+   +E I ++ ++  ++  +H  R  N+VA+ LAR
Subjt:  DEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-1032.7Show/hide
Query:  AEEPRCE-NLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLN-SVLNVTE-RPQSFVIESDCL
        A  P+ E NL  Q  W  PP+   K N+DA+W       G+GWI+R+ SG  +    +++      NVLEA+   E L  +VL ++    +  + ESD  
Subjt:  AEEPRCE-NLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLN-SVLNVTE-RPQSFVIESDCL

Query:  NLIRNLNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLSRH
         L+  LN +D   T L+  +E I +L  +   + F+  PR  N+VA+ +ARE    S +
Subjt:  NLIRNLNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLSRH

AT3G09510.1 Ribonuclease H-like superfamily protein1.9e-0429.61Show/hide
Query:  PRCENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPIC-ASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRN
        P  +  +++  W  PP +  K N DA ++  +     GWI+R+  G+PI   SMK      P+   E KAL   L     +    Q F +E DC  LI N
Subjt:  PRCENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPIC-ASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRN

Query:  LNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLS
        L       + L   +E I   A     + F    R  N++A+ LA+ G   S
Subjt:  LNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLS

AT4G29090.1 Ribonuclease H-like superfamily protein7.9e-1130.82Show/hide
Query:  SEDCGVVTAEEPRCENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKAL-WEGLNSVLNVTERPQSFV
        +E CG     +P+  N  S   W PPPH   K N+DA+WN      G+GW++R+  G       +++ +   +   E +A+ W    +VL+++    ++V
Subjt:  SEDCGVVTAEEPRCENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKAL-WEGLNSVLNVTERPQSFV

Query:  I-ESDCLNLIRNLNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALARE
        I ESD   LI  LN  DE    LK  ++ + +L      + F   PR  N +A  +ARE
Subjt:  I-ESDCLNLIRNLNKEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALARE

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0425.19Show/hide
Query:  WNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELK
        W+PP     K N DAS +      GLGWI+R+S G+ I   M   + R      E   L   + +      +    + E D   + R +N +  +   L+
Subjt:  WNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLNKEDEDLTELK

Query:  VCVEVILKLAQNQGVLHFQHCPRLQNRVANALARE
          ++ I     +   + F    R QN  A+ LA++
Subjt:  VCVEVILKLAQNQGVLHFQHCPRLQNRVANALARE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAATTTCGCCTTGTAATGGGAATTGGATTGGATTTGGAGAAGAAGAAATGGGAATGGGAAGATGAAGGGGAGTTAATGGGAACCAGAGGAGTGCCGGGATTGAA
ACTCTCGGTTCTAATTGAAGAAGCTGAAAATTTGGTGACGATGGTAGAGGTTAAGTCGTACGCGAAATGCTCAAGATCGAGCAATGTTTTGGCTCACAATCTTGTGCGTG
ATGCAGCCACCCGTGGTTCTTTTGTATTTTTTGTGAAATTTTCTCTTCAGAGGATGGAAATTGTCGAAAGGGATGAGAGTTTCCCTTTGTGGTTCTCCTCGATTTCAGAG
GATTGCGGTGTTGTCACAGCTGAAGAGCCGAGATGCGAGAACCTCCAGAGTCAAGCCCTTTGGAATCCTCCTCCTCATTCGTGCTGGAAGATCAATTCAGACGCCTCCTG
GAATGCAACAGAAGGTTTTGGAGGTTTGGGCTGGATCGTGCGTGACTCCAGCGGATCTCCCATATGCGCGAGCATGAAATCTGTCAAAGAAAGGTGGCCGATCAACGTTC
TTGAAGCTAAAGCCTTATGGGAAGGTCTGAATTCTGTGCTCAATGTGACGGAAAGACCACAAAGCTTTGTGATTGAGTCCGACTGCCTGAATCTAATCAGAAATCTCAAC
AAAGAAGATGAGGATCTTACCGAATTGAAGGTATGTGTTGAAGTCATTCTCAAACTGGCTCAAAATCAGGGAGTGCTCCATTTTCAGCATTGCCCTAGATTGCAGAACAG
AGTGGCGAATGCCCTTGCTCGTGAGGGTGCTGGTCTCAGTCGCCATCTGGGTTTTTTTTGTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAATTTCGCCTTGTAATGGGAATTGGATTGGATTTGGAGAAGAAGAAATGGGAATGGGAAGATGAAGGGGAGTTAATGGGAACCAGAGGAGTGCCGGGATTGAA
ACTCTCGGTTCTAATTGAAGAAGCTGAAAATTTGGTGACGATGGTAGAGGTTAAGTCGTACGCGAAATGCTCAAGATCGAGCAATGTTTTGGCTCACAATCTTGTGCGTG
ATGCAGCCACCCGTGGTTCTTTTGTATTTTTTGTGAAATTTTCTCTTCAGAGGATGGAAATTGTCGAAAGGGATGAGAGTTTCCCTTTGTGGTTCTCCTCGATTTCAGAG
GATTGCGGTGTTGTCACAGCTGAAGAGCCGAGATGCGAGAACCTCCAGAGTCAAGCCCTTTGGAATCCTCCTCCTCATTCGTGCTGGAAGATCAATTCAGACGCCTCCTG
GAATGCAACAGAAGGTTTTGGAGGTTTGGGCTGGATCGTGCGTGACTCCAGCGGATCTCCCATATGCGCGAGCATGAAATCTGTCAAAGAAAGGTGGCCGATCAACGTTC
TTGAAGCTAAAGCCTTATGGGAAGGTCTGAATTCTGTGCTCAATGTGACGGAAAGACCACAAAGCTTTGTGATTGAGTCCGACTGCCTGAATCTAATCAGAAATCTCAAC
AAAGAAGATGAGGATCTTACCGAATTGAAGGTATGTGTTGAAGTCATTCTCAAACTGGCTCAAAATCAGGGAGTGCTCCATTTTCAGCATTGCCCTAGATTGCAGAACAG
AGTGGCGAATGCCCTTGCTCGTGAGGGTGCTGGTCTCAGTCGCCATCTGGGTTTTTTTTGTTGGTGA
Protein sequenceShow/hide protein sequence
MQEFRLVMGIGLDLEKKKWEWEDEGELMGTRGVPGLKLSVLIEEAENLVTMVEVKSYAKCSRSSNVLAHNLVRDAATRGSFVFFVKFSLQRMEIVERDESFPLWFSSISE
DCGVVTAEEPRCENLQSQALWNPPPHSCWKINSDASWNATEGFGGLGWIVRDSSGSPICASMKSVKERWPINVLEAKALWEGLNSVLNVTERPQSFVIESDCLNLIRNLN
KEDEDLTELKVCVEVILKLAQNQGVLHFQHCPRLQNRVANALAREGAGLSRHLGFFCW