; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022627 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022627
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:10224473..10228397
RNA-Seq ExpressionSpg022627
SyntenySpg022627
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023916366.1 uncharacterized protein LOC112027956 [Quercus suber]8.1e-1942.34Show/hide
Query:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH
        +++  +  R+++ E +    S+  PRP      D++ R  +A     AR ++YTPL   LEQVL  I+D   LK PEK+R DP++RNR+KYC F  DHGH
Subjt:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH

Query:  ATRECIQLRDEIEALIREGYLKGFVGNDRAAHGEQKM
         T EC  L+ +IE LIR+G LK F+G D   H ++K+
Subjt:  ATRECIQLRDEIEALIREGYLKGFVGNDRAAHGEQKM

XP_030932814.1 uncharacterized protein LOC115958537 [Quercus lobata]4.0e-1840.88Show/hide
Query:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH
        +++  +  R ++ E      S+ +PRP      D++ R +R       R + YTPL A L+QVL  I+D   LK PEK++ DP++RN+NKYC F  DHGH
Subjt:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH

Query:  ATRECIQLRDEIEALIREGYLKGFVGNDRAAHGEQKM
         T EC  L+ +IE LIR+G L+ FVG D   H ++K+
Subjt:  ATRECIQLRDEIEALIREGYLKGFVGNDRAAHGEQKM

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]4.0e-1859.26Show/hide
Query:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDR
        R ++YTPL A LEQVL  I+D   LK PEKL+ DP++RNRNKYC F  DHGH T EC  L+ +IE LIR+G L+GF+G D+
Subjt:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDR

XP_030958631.1 uncharacterized protein LOC115980538 [Quercus lobata]4.0e-1843.41Show/hide
Query:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH
        +++  +  R ++ E      S+ +PRP      D++ R  R       R + YTPL A L QVL  I+D   LK PEK++ DP++RN+NKYC F  DHGH
Subjt:  SVVVYRMDRVQKPEGSLGSISKISPRPM--AEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGH

Query:  ATRECIQLRDEIEALIREGYLKGFVGNDR
         T EC  L+ +IE LIR+G LK FVG DR
Subjt:  ATRECIQLRDEIEALIREGYLKGFVGNDR

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]4.0e-1859.26Show/hide
Query:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDR
        R ++YTPL A LEQVL  I+D   LK PEKL+ DP++RNRNKYC F  DHGH T EC  L+ +IE LIR+G L+GF+G D+
Subjt:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDR

TrEMBL top hitse value%identityAlignment
A0A2N9FRK4 Ribonuclease H8.2e-1737.34Show/hide
Query:  ERMLASLDRTSVVVYRMDRVQKPEGSLGSISKISPRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYC
        E  L + D TS    R D   +P  +L S  KI        + R R     R    RF  +TPL A ++++   I+D   LK P KL ++PDRR ++KYC
Subjt:  ERMLASLDRTSVVVYRMDRVQKPEGSLGSISKISPRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYC

Query:  MFRGDHGHATRECIQLRDEIEALIREGYLKGFVGND-RAAHGEQKMSRECYFMALRNI
         F  DHGH T  C  L+ +IE LI++G L+ FV  D R A G  + SR+ Y   + N+
Subjt:  MFRGDHGHATRECIQLRDEIEALIREGYLKGFVGND-RAAHGEQKMSRECYFMALRNI

A0A5C7IR28 Retrotrans_gag domain-containing protein1.7e-1746.6Show/hide
Query:  ISPRPMAEA--DQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLK
        + P+P+     +  P + R  R   +++  Y  L A+ EQ+LAA+ +T LL +PE LR DP RRN+ KYC F GD GH T EC  L+D IE LIR GYLK
Subjt:  ISPRPMAEA--DQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLK

Query:  GFV
         F+
Subjt:  GFV

A0A6J1DDR5 uncharacterized protein LOC1110201159.7e-1841.41Show/hide
Query:  PRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKG
        P   +  D   RS  +  N+   +ERYTP T  + ++L  I+++    LLKRPEKLR DP++RN++KYC+F  DHGH+T  C +L+ +IE LI++ Y K 
Subjt:  PRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKG

Query:  FVGNDRAAHGEQKMSRECYFMALRNIDR
        FVG  R+   E+K  R+   +  R  DR
Subjt:  FVGNDRAAHGEQKMSRECYFMALRNIDR

A0A6J1DZ52 uncharacterized protein LOC1110256124.8e-1751.22Show/hide
Query:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDRA
        +FE+YTP T  LEQVL  I+D  LLK PE +++ P++R++ +YC+F  DHGHAT +C  L++E+E LIR+GYLK +V + +A
Subjt:  RFERYTPLTASLEQVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDRA

A0A6J1E1B3 uncharacterized protein LOC1110255214.3e-1841.35Show/hide
Query:  RVQKPEGSLGSISKISPRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQ
        R  K +G   S SK      + +    R   + RN+   +ERYTP T    ++L  I++T    LLKRP+KLR DP++RN++KYC F  DHGH T  C +
Subjt:  RVQKPEGSLGSISKISPRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFRGDHGHATRECIQ

Query:  LRDEIEALIREGYLKGFVGNDRAAHGEQKMSRE
        L+ +IE LI+ GY K FVG  R++  E+K  R+
Subjt:  LRDEIEALIREGYLKGFVGNDRAAHGEQKMSRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTTGGGGAGGAGACGCCGACGAGGAGGAGGAGGCGGCGGCGGTGGGGAGGGGGAGGAGGTGGCGTGTACGAGGAGCTGACGAGGACAACCGGGAGGAGATGGGA
CCAAGAAAAGGACCCAGAGGAAGACCATACCAACAGGCCGGGCCAACGTGGCCTGACCCGTACGGTCGGCCTCGGCCCGCTTGTGCAGGCCGAGTCGGTTCGCCTCCACC
CTATCCCTATCGCCTCGAGCCGCCCCGGTTCCACTCGATTCGCCCCAAAACGCCTTCGGATTCCTAAAAACCCTAGGAGCACGAGCAGGTCACGTCTTCCCCAGCTTCTA
CAAATTCACTGTTGGTGTCACGTGAAGGGCAGGTGGGTCGCTTGGCCAAATTTTGGCATCAACAGTCGGCGCCGTCTGTGGGAAAGGATGCTTGCTAGTTTGGATCGCAC
ATCGGTGGTGGTCTACAGGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGCTCGATCAGCAAGATCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACCAAGAA
GCCACAGGGCTGTGCGTAACCAAAAAGCCAGATTCGAGAGGTATACACCACTAACAGCTTCGCTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGC
CCAGAAAAGTTGAGATCAGACCCCGACAGGAGGAATAGAAACAAATACTGCATGTTCCGCGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGAT
AGAAGCCCTAATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGGAACGACAGAGCAGCGCATGGCGAGCAAAAGATGTCGAGGGAATGTTACTTTATGGCTCTCAGAAACA
TCGACAGGAAGGTTCAAGCAACAGCCTCGAGAGTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTTGGGGAGGAGACGCCGACGAGGAGGAGGAGGCGGCGGCGGTGGGGAGGGGGAGGAGGTGGCGTGTACGAGGAGCTGACGAGGACAACCGGGAGGAGATGGGA
CCAAGAAAAGGACCCAGAGGAAGACCATACCAACAGGCCGGGCCAACGTGGCCTGACCCGTACGGTCGGCCTCGGCCCGCTTGTGCAGGCCGAGTCGGTTCGCCTCCACC
CTATCCCTATCGCCTCGAGCCGCCCCGGTTCCACTCGATTCGCCCCAAAACGCCTTCGGATTCCTAAAAACCCTAGGAGCACGAGCAGGTCACGTCTTCCCCAGCTTCTA
CAAATTCACTGTTGGTGTCACGTGAAGGGCAGGTGGGTCGCTTGGCCAAATTTTGGCATCAACAGTCGGCGCCGTCTGTGGGAAAGGATGCTTGCTAGTTTGGATCGCAC
ATCGGTGGTGGTCTACAGGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGCTCGATCAGCAAGATCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACCAAGAA
GCCACAGGGCTGTGCGTAACCAAAAAGCCAGATTCGAGAGGTATACACCACTAACAGCTTCGCTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGC
CCAGAAAAGTTGAGATCAGACCCCGACAGGAGGAATAGAAACAAATACTGCATGTTCCGCGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGAT
AGAAGCCCTAATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGGAACGACAGAGCAGCGCATGGCGAGCAAAAGATGTCGAGGGAATGTTACTTTATGGCTCTCAGAAACA
TCGACAGGAAGGTTCAAGCAACAGCCTCGAGAGTTGGCTGA
Protein sequenceShow/hide protein sequence
MSVGEETPTRRRRRRRWGGGGGGVYEELTRTTGRRWDQEKDPEEDHTNRPGQRGLTRTVGLGPLVQAESVRLHPIPIASSRPGSTRFAPKRLRIPKNPRSTSRSRLPQLL
QIHCWCHVKGRWVAWPNFGINSRRRLWERMLASLDRTSVVVYRMDRVQKPEGSLGSISKISPRPMAEADQRPRSHRAVRNQKARFERYTPLTASLEQVLAAIQDTNLLKR
PEKLRSDPDRRNRNKYCMFRGDHGHATRECIQLRDEIEALIREGYLKGFVGNDRAAHGEQKMSRECYFMALRNIDRKVQATASRVG