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Spg022642 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022642
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionrRNA methyltransferase 1, mitochondrial
Genome locationscaffold2:7862339..7863838
RNA-Seq ExpressionSpg022642
SyntenySpg022642
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586465.1 rRNA methyltransferase 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.2e-2955.78Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        ++SSSHS+KDEGVKS +KLPWL A NS EK +WL KST KK  D+SSW ES+  +EK RSS DYS KTFGKRGNR SG++PEKRYGK PV S + S+WE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYE-EVEDE
        SAE    +   ++  EE+        SR+   D E  Q+++ EVEDE
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYE-EVEDE

KAG7021321.1 rRNA methyltransferase 1, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-2955.48Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        ++SSSHS+KDEGVKS +KLPWL A NS EK +WL KST KK  D+SSW ES+  +EK RSS DYS KTFGKRGNR SG++PEKRYGK PV S + S+WE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE
        SAE    +   ++  EE+   +     R R D+ E+     EVEDE
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE

XP_022965658.1 uncharacterized protein LOC111465489 [Cucurbita maxima]5.7e-3155.41Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        ++SSSHS+KDEGVKS NKLPWL A NS EK KWL+KST KK  D+SSW ES+  +EK RSS DYS KTFGKRGNRPSG++PEKRYGK PV SA  S+WE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIE-RGQSYEEVEDER
        SAE    +      +  +          QRN D+E   +  E + D R
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIE-RGQSYEEVEDER

XP_023536668.1 rRNA methyltransferase 1, mitochondrial [Cucurbita pepo subsp. pepo]3.2e-2956.16Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        ++SSSHS+KDEGVKS +KLPWL A NS EK +WL+KST KK  D+SSW ES+  +EK RSS DYS KT GKRGNRPSG++ EKRYGK PV SA  S+WE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE
        SAE L  +   ++  EE+   +     R R D+ E+     EVEDE
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE

XP_038880007.1 uncharacterized protein LOC120071698 [Benincasa hispida]4.4e-3153.25Show/hide
Query:  NPKRLRIPKNPRSMSS-----FSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGED---QSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPS
        N   L I  + RS SS     F SS+ LKDEGV SGNKLPWL A NSLEK KW +KST +KG D   +SSW ESD  +++ RSS DYS KT G++GNR S
Subjt:  NPKRLRIPKNPRSMSS-----FSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGED---QSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPS

Query:  GNKPEKRYGKTPVRSANHSTWEISAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE
         ++PEKR GK P+ SAN STWE+SAE    +      +  +          Q+NDDIERG SYEEVEDE
Subjt:  GNKPEKRYGKTPVRSANHSTWEISAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE

TrEMBL top hitse value%identityAlignment
A0A0A0LW97 SpoU_sub_bind domain-containing protein4.4e-2948.89Show/hide
Query:  LRSVP-AAPSRLGSIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKT
        L S+P +  S L S+  N  R            FSSS+ LKDEGV SGNKLPWL A +S+EK KWL+KST KK  D+S W ES           D+ +K 
Subjt:  LRSVP-AAPSRLGSIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKT

Query:  FGKRGNRPSGNKPEKRYGKTPVRSANHSTWEISAESLLVKASSLQIKEEKVGGQEWTM--SRQRNDDIERGQSYEEVEDE
        FGK GNR S ++PEKRYGK P+ SAN STWE+SAE    +  S+++ +EK   +   M    Q++DDIER  SYEEVEDE
Subjt:  FGKRGNRPSGNKPEKRYGKTPVRSANHSTWEISAESLLVKASSLQIKEEKVGGQEWTM--SRQRNDDIERGQSYEEVEDE

A0A1S3BQ13 uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_59132.9e-2849.7Show/hide
Query:  SIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKP
        S+G + K L + K+      FSSS+ LKDEGV SGNKLPWL A NS+EK KWL+KST KK  D+SSW ES           D+ +K FGK GNR S ++P
Subjt:  SIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKP

Query:  EKRYGKTPVRSANHSTWEISAESL----LVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE
        EKRYGK P+ SAN STWE+SAE      +  A   + +  ++  +E     Q NDDIER  +YEE EDE
Subjt:  EKRYGKTPVRSANHSTWEISAESL----LVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE

A0A5D3CIS9 Putative tRNA/rRNA methyltransferase2.9e-2849.7Show/hide
Query:  SIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKP
        S+G + K L + K+      FSSS+ LKDEGV SGNKLPWL A NS+EK KWL+KST KK  D+SSW ES           D+ +K FGK GNR S ++P
Subjt:  SIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKP

Query:  EKRYGKTPVRSANHSTWEISAESL----LVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE
        EKRYGK P+ SAN STWE+SAE      +  A   + +  ++  +E     Q NDDIER  +YEE EDE
Subjt:  EKRYGKTPVRSANHSTWEISAESL----LVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDE

A0A6J1CVE3 uncharacterized protein LOC1110145642.9e-2854.73Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        SFSSSH LKDEGV+SGNKLPWL       K+KW EKS+ K G DQSSW +SD  + K RSS    AKTFGK+ NR SG+K EKRYG++P R+A  STWE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTM--SRQRNDDIERGQSYEEVEDE
        SAE+       +   +E + G+   +    +RNDD ER  SYEEVEDE
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTM--SRQRNDDIERGQSYEEVEDE

A0A6J1HPM2 uncharacterized protein LOC1114654892.8e-3155.41Show/hide
Query:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI
        ++SSSHS+KDEGVKS NKLPWL A NS EK KWL+KST KK  D+SSW ES+  +EK RSS DYS KTFGKRGNRPSG++PEKRYGK PV SA  S+WE+
Subjt:  SFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRPSGNKPEKRYGKTPVRSANHSTWEI

Query:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIE-RGQSYEEVEDER
        SAE    +      +  +          QRN D+E   +  E + D R
Subjt:  SAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIE-RGQSYEEVEDER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCCCTCCGTTCGGTCCCTGCTGCCCCTAGTCGCCTCGGTTCCATCGGGTTCAACCCGAAACGCCTTCGAATTCCTAAAAACCCTAGGAGCATGAGCAGTTTTTC
AAGCTCCCATTCTCTTAAAGATGAAGGAGTGAAATCTGGGAATAAACTTCCTTGGTTAGTAGCAGAAAATAGTCTTGAGAAGACAAAATGGTTGGAGAAATCAACGATAA
AGAAGGGAGAGGACCAATCGTCTTGGATGGAATCAGATTTAATGACAGAAAAGAAGAGATCCTCAAGGGACTATTCAGCAAAGACATTTGGAAAAAGGGGTAATAGGCCA
TCTGGAAATAAACCAGAAAAGAGATATGGCAAAACACCTGTTAGAAGTGCTAATCATTCTACTTGGGAGATCTCTGCAGAGAGTTTGCTAGTCAAGGCATCGAGTCTGCA
GATTAAAGAAGAGAAAGTAGGCGGACAAGAGTGGACAATGAGCAGGCAGCGAAACGACGATATCGAAAGGGGGCAAAGTTATGAAGAAGTAGAAGATGAACGACCTGTCT
GGAATAACTTTTTAAATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCCCTCCGTTCGGTCCCTGCTGCCCCTAGTCGCCTCGGTTCCATCGGGTTCAACCCGAAACGCCTTCGAATTCCTAAAAACCCTAGGAGCATGAGCAGTTTTTC
AAGCTCCCATTCTCTTAAAGATGAAGGAGTGAAATCTGGGAATAAACTTCCTTGGTTAGTAGCAGAAAATAGTCTTGAGAAGACAAAATGGTTGGAGAAATCAACGATAA
AGAAGGGAGAGGACCAATCGTCTTGGATGGAATCAGATTTAATGACAGAAAAGAAGAGATCCTCAAGGGACTATTCAGCAAAGACATTTGGAAAAAGGGGTAATAGGCCA
TCTGGAAATAAACCAGAAAAGAGATATGGCAAAACACCTGTTAGAAGTGCTAATCATTCTACTTGGGAGATCTCTGCAGAGAGTTTGCTAGTCAAGGCATCGAGTCTGCA
GATTAAAGAAGAGAAAGTAGGCGGACAAGAGTGGACAATGAGCAGGCAGCGAAACGACGATATCGAAAGGGGGCAAAGTTATGAAGAAGTAGAAGATGAACGACCTGTCT
GGAATAACTTTTTAAATGTTTAA
Protein sequenceShow/hide protein sequence
MVALRSVPAAPSRLGSIGFNPKRLRIPKNPRSMSSFSSSHSLKDEGVKSGNKLPWLVAENSLEKTKWLEKSTIKKGEDQSSWMESDLMTEKKRSSRDYSAKTFGKRGNRP
SGNKPEKRYGKTPVRSANHSTWEISAESLLVKASSLQIKEEKVGGQEWTMSRQRNDDIERGQSYEEVEDERPVWNNFLNV