; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022688 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022688
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:14458416..14462354
RNA-Seq ExpressionSpg022688
SyntenySpg022688
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-3552.72Show/hide
Query:  SQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQC
        S+  + + ++F QPRQ +T  E F ++F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC
Subjt:  SQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQC

Query:  LVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
          ST TR SAF+ LS+STSKK + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK SV INTEGSL V
Subjt:  LVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3655.06Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST
        + ++  QPRQ +T  E F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  
Subjt:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST

Query:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
        R SAF+RLS+STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL V
Subjt:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-3552.22Show/hide
Query:  RQRSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVST
        +++ ++F QPR+ +T  E F ++F +      +      T+  ++V       EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC +ST
Subjt:  RQRSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVST

Query:  STRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
         TR SAF+RLS+S SKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K++S +PSR+KRK S+ INTEGSL V
Subjt:  STRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-3653.37Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST
        + ++F QPR+ +T  E  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST

Query:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
        R SAF+RLS+STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL V
Subjt:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-3552.15Show/hide
Query:  IAESSQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEE
        + E S + + + ++F QPRQ +T  E   ++F   H KE       +   +          +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE
Subjt:  IAESSQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEE

Query:  EHQCLVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL
        E+QC  ST  R S F+RLS+STSKK + STS FDRLK+TNDQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Subjt:  EHQCLVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein7.7e-3652.72Show/hide
Query:  SQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQC
        S+  + + ++F QPRQ +T  E F ++F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC
Subjt:  SQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQC

Query:  LVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
          ST TR SAF+ LS+STSKK + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK SV INTEGSL V
Subjt:  LVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein5.3e-3755.06Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST
        + ++  QPRQ +T  E F ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  
Subjt:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST

Query:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
        R SAF+RLS+STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL V
Subjt:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7U974 Retrotransposon gag protein7.7e-3652.22Show/hide
Query:  RQRSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVST
        +++ ++F QPR+ +T  E F ++F +      +      T+  ++V       EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC +ST
Subjt:  RQRSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVST

Query:  STRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
         TR SAF+RLS+S SKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K++S +PSR+KRK S+ INTEGSL V
Subjt:  STRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7UI09 Retrotransposon gag protein3.4e-3653.37Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST
        + ++F QPR+ +T  E  S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTST

Query:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV
        R SAF+RLS+STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL V
Subjt:  RPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.7e-3552.15Show/hide
Query:  IAESSQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEE
        + E S + + + ++F QPRQ +T  E   ++F   H KE       +   +          +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE
Subjt:  IAESSQTQRQRSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEE

Query:  EHQCLVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL
        E+QC  ST  R S F+RLS+STSKK + STS FDRLK+TNDQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Subjt:  EHQCLVSTSTRPSAFQRLSVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTACTGTTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGAAAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTATCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGCAGAGA
AGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGT
AGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGA
CAGAAGAAGAACATCAATGTTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGAT
CGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACG
TATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTCAACTTCTCATGCGCTCGTGTTTTCAAGGTCTCATGTTGCTTCGCTGCAATTCCTTCCT
CCAAGTTCGAAGGTTGGTTCTCATCTGCTTTGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCGTCGAGGGTTCTCAAGTTGCTTCGCTGCAGTTCTTTCTCTCCAAGT
TTGAAACTTCTCATGCGCTCGTGTTCTCACGTTGTTGTGCTGCAGTTCCTTCCTCCAAGTTTGAGAAAGTTCTCATCCGTTTCGCTGGAGTTCTTTCTCCCCAAATTTGA
AACTTCTCATGTGCTTCGTTGTTGCAGTTCGAAGGTCTTCTCACGTCTTATGCATGCGTCGATGAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAA
GTGACTGGTCTAGACAGGTGGTGAAATCATTGCAAGAGAAGTTGATGACGACCATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTG
GTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTAAA
GTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTTTAGACAGGTGGTGAATCACTGCAAGAGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTACTGTTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGAAAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTATCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGCAGAGA
AGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGT
AGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGA
CAGAAGAAGAACATCAATGTTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGAT
CGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACG
TATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTCAACTTCTCATGCGCTCGTGTTTTCAAGGTCTCATGTTGCTTCGCTGCAATTCCTTCCT
CCAAGTTCGAAGGTTGGTTCTCATCTGCTTTGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCGTCGAGGGTTCTCAAGTTGCTTCGCTGCAGTTCTTTCTCTCCAAGT
TTGAAACTTCTCATGCGCTCGTGTTCTCACGTTGTTGTGCTGCAGTTCCTTCCTCCAAGTTTGAGAAAGTTCTCATCCGTTTCGCTGGAGTTCTTTCTCCCCAAATTTGA
AACTTCTCATGTGCTTCGTTGTTGCAGTTCGAAGGTCTTCTCACGTCTTATGCATGCGTCGATGAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAA
GTGACTGGTCTAGACAGGTGGTGAAATCATTGCAAGAGAAGTTGATGACGACCATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTG
GTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTAAA
GTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTTTAGACAGGTGGTGAATCACTGCAAGAGAAGTTGA
Protein sequenceShow/hide protein sequence
MSSTVHCCFNELTLQEDKASIVAGKETTLQGAYTNDKFLVKYNPLFEPDSDVVTIMMTETRTMEERMAEMQEHINTLMKAIEEKDYQIAQLKSQIENQHIAESSQTQRQR
SKEFSQPRQPVTAKELFSKTFHKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCLVSTSTRPSAFQRLSVSTSKKSQFSTSVFD
RLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVNFSCARVFKVSCCFAAIPSSKFEGWFSSALLEFFLPKFETSSRVLKLLRCSSFSPS
LKLLMRSCSHVVVLQFLPPSLRKFSSVSLEFFLPKFETSHVLRCCSSKVFSRLMHASMKANLVTTPAGNYSHQSDWSRQVVKSLQEKLMTTMVTTPAGNYSHQSDWSRQV
VKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWFRQVVNHCKRS