CuGenDBv2

Gene ID	Spg022876
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem I assembly protein ycf3
Genome location	scaffold173:6216..8085
RNA-Seq Expression	Spg022876
Synteny	Spg022876
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015979 - photosynthesis (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ERN02875.1 hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]

3.6e-28

94.03

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

KAF3433879.1 hypothetical protein FNV43_RR24982 [Rhamnella rubrinervis]

4.7e-28

94.03

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETL YGSKGRNLLAYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKIT+RF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

KAG6573954.1 Photosystem I assembly protein Ycf3, partial [Cucurbita argyrosperma subsp. sororia]

8.1e-28

94.03

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAE WFNQAAEYWKQAIAL PGN+IEA NWLKITRRFK
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

KAG6735386.1 hypothetical protein POTOM_062012 [Populus tomentosa]

4.3e-29

97.01

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

TKS04885.1 ribosomal protein S4 [Populus alba]

4.3e-29

97.01

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

TrEMBL top hits

e value

%identity

Alignment

A0A2Z4KH56 Photosystem I assembly protein ycf3

8.7e-28

92.54

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLL YSDRGEQAIRQGDSEIAE+WF+QAAEYWKQAIALTPGNYIEAQNWLKIT RF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

A0A4U5Q996 30S ribosomal protein S4, chloroplastic

2.1e-29

97.01

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

A0A7J6HQR9 Uncharacterized protein

1.8e-28

94.03

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

G7KJV5 Photosystem I assembly protein ycf3

8.7e-28

92.54

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNLL YSDRGEQAIRQGDSEIAE+WF+QAAEYWKQAIALTPGNYIEAQNWLKIT RF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

W1P7C5 Uncharacterized protein

1.8e-28

94.03

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Query:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITRRF+
Subjt:  ETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

SwissProt top hits

e value

%identity

Alignment

A0ZZ36 Photosystem I assembly protein Ycf3

6.9e-22

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Q2L906 Photosystem I assembly protein Ycf3

6.9e-22

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Q49KZ7 Photosystem I assembly protein Ycf3

6.9e-22

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Q4VZH4 Photosystem I assembly protein Ycf3

6.2e-23

100

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Q9MTP0 Photosystem I assembly protein Ycf3

6.9e-22

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.0e-20

Show/hide

Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
        RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL ITRRF+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Sequences

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CDS sequence

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ATGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACTTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAA
TCAAGCCGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

mRNA sequence

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Protein sequence

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METLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Spg022876 (gene) of Sponge gourd (cylindrica) v1 genome