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Spg022898 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022898
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNADH dehydrogenase I subunit 2
Genome locationscaffold94:98555..100798
RNA-Seq ExpressionSpg022898
SyntenySpg022898
Gene Ontology termsGO:0006914 - autophagy (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0050821 - protein stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042301 - phosphate ion binding (molecular function)
InterPro domainsIPR022546 - Uncharacterised protein family Ycf68


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV25630.1 hypothetical protein [Tanacetum cinerariifolium]9.9e-4945.07Show/hide
Query:  PSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA-----------------------------------
        PSSPSRKRWILGAVRIDPCSAVANALSIP GE +  LDMPRILLKERGAFGNADTGGAWLSSARA                                   
Subjt:  PSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA-----------------------------------

Query:  --------------------------VRLP-----------------VISRRKVRMTSSHHAP-----------YALGDTRATMAGTKGRDPA-------
                                  VRLP                 V+      M SSH+               + D R        R  A       
Subjt:  --------------------------VRLP-----------------VISRRKVRMTSSHHAP-----------YALGDTRATMAGTKGRDPA-------

Query:  ---------------RVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGTRRLDLAVR--------SAMIYFTGEVSGSSPGWPSYA
                       +VRSNVDPTF SLVGSGRSGGDH GSSLLENPYIPYQ MDSYLSSTG ++ DL V         +A  +    V          A
Subjt:  ---------------RVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGTRRLDLAVR--------SAMIYFTGEVSGSSPGWPSYA

Query:  KEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQL
            KRIEEASDSFM APLGSGGYSS GRAPLLQL
Subjt:  KEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQL

KAF1876761.1 hypothetical protein Lal_00044212 [Lupinus albus]4.9e-4081.82Show/hide
Query:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRA
        GANGIRYPSSPSRKRWILG VRIDPC+AVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA         +  + SS   PYALGDTRA
Subjt:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRA

Query:  TMAGTKGRDP
        TMAGTK RDP
Subjt:  TMAGTKGRDP

KAF1876869.1 hypothetical protein Lal_00033161 [Lupinus albus]1.7e-5365.8Show/hide
Query:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVR--LPVISRRKVR----MTSSHHAPYA
        GANGIRYPSSPSRKRWILG VRIDPC+AVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA     P      V+    +    H  Y 
Subjt:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVR--LPVISRRKVR----MTSSHHAPYA

Query:  LGD--TRATMAGTKGRDPAR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG
          D  +R+  AG  GR PAR                           VRSNVDPTFYSLVGSGRSGGDH GSSLLEN YIPYQYMDSYLSSTG
Subjt:  LGD--TRATMAGTKGRDPAR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG

KAF3623672.1 hypothetical protein FXO38_30632 [Capsicum annuum]3.5e-3853.76Show/hide
Query:  MPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYI
        M RILLKER AFGN DTGG WLSSAR VRL VISRRKVRMTSSHHAPY LGDTRATMAGTKGRDPARVRS      Y +              +L+ P  
Subjt:  MPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYI

Query:  PYQYMDSYLSSTGTRRLDLAVRSAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLD
        P                                              KRIEEASD FM APLGSGG++SVGRA LLQLG CDYGLD
Subjt:  PYQYMDSYLSSTGTRRLDLAVRSAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLD

PHT45149.1 hypothetical protein CQW23_14307 [Capsicum baccatum]2.7e-3854.01Show/hide
Query:  MPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYI
        MPRILLKERGAFGNADT GAW+SSARAVRLPVISR+KVRMTSSHHAPYALG+TRATMA TKGRDP R                            + P  
Subjt:  MPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYI

Query:  PYQYMDSYLSSTGTRRLDLAVRSAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV
        P                                              KRIEEASD FM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Subjt:  PYQYMDSYLSSTGTRRLDLAVRSAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

TrEMBL top hitse value%identityAlignment
A0A2N9GIA5 Uncharacterized protein ycf685.0e-5460.39Show/hide
Query:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV---------------------RLPVI
        RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA                      R    
Subjt:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV---------------------RLPVI

Query:  SRRKVRMTSSHHAPYALGDTRATMAGTKGRD---------------------------PARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD
        + R    T+ +  P  +   R TM     R                              +VRSNVDPTFYS+VGSGRSGGDH GSSLLENPYIPYQYMD
Subjt:  SRRKVRMTSSHHAPYALGDTRATMAGTKGRD---------------------------PARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD

Query:  SYLSSTG
        SYLSSTG
Subjt:  SYLSSTG

A0A2N9HJI4 Uncharacterized protein ycf682.1e-5257.47Show/hide
Query:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV--------------RLPVISRRKVRM
        RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA                 P+   R    
Subjt:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV--------------RLPVISRRKVRM

Query:  TSS------------------------HHAPYALGDTRA-----------------------TMAGTKGRDPA-RVRSNVDPTFYSLVGSGRSGGDHLGS
         +                         H A + +G   A                       T + T+  D A +VRSNVDPTFYS+VGSGRSGGDH GS
Subjt:  TSS------------------------HHAPYALGDTRA-----------------------TMAGTKGRDPA-RVRSNVDPTFYSLVGSGRSGGDHLGS

Query:  SLLENPYIPYQYMDSYLSSTG
        SLLENPYIPYQYMDSYLSSTG
Subjt:  SLLENPYIPYQYMDSYLSSTG

A0A2N9HP93 Uncharacterized protein ycf682.6e-4747.64Show/hide
Query:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV---------------------RLPVI
        RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA                      R    
Subjt:  RGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAV---------------------RLPVI

Query:  SRRKVRMTSSHHAPYALGDTRATM--------------------------------------------------------------------AGTKGRDP
        + R    T+ +  P  +   R TM                                                                    AG  GR P
Subjt:  SRRKVRMTSSHHAPYALGDTRATM--------------------------------------------------------------------AGTKGRDP

Query:  AR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG
        AR                           VRSNVDPTFYS+VGSGRSGGDH GSSLLENPYIPYQYMDSYLSSTG
Subjt:  AR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG

A0A6A5MP59 Uncharacterized protein ycf682.4e-4081.82Show/hide
Query:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRA
        GANGIRYPSSPSRKRWILG VRIDPC+AVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA         +  + SS   PYALGDTRA
Subjt:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRA

Query:  TMAGTKGRDP
        TMAGTK RDP
Subjt:  TMAGTKGRDP

A0A6A5MVI7 Uncharacterized protein ycf688.4e-5465.8Show/hide
Query:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVR--LPVISRRKVR----MTSSHHAPYA
        GANGIRYPSSPSRKRWILG VRIDPC+AVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARA     P      V+    +    H  Y 
Subjt:  GANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVR--LPVISRRKVR----MTSSHHAPYA

Query:  LGD--TRATMAGTKGRDPAR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG
          D  +R+  AG  GR PAR                           VRSNVDPTFYSLVGSGRSGGDH GSSLLEN YIPYQYMDSYLSSTG
Subjt:  LGD--TRATMAGTKGRDPAR---------------------------VRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG

SwissProt top hitse value%identityAlignment
P52807 Uncharacterized protein ycf681.1e-1070Show/hide
Query:  RVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG
        +VRSN DPTFYS V  G  G     HLGSSLLENPYIPYQ MD YLS TG
Subjt:  RVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG

Q49KT9 Uncharacterized protein ycf686.1e-1791.49Show/hide
Query:  RVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG
        +VRSNVDPTFYSLVGSGRSGGD  GSSLLENPYIPYQ MDSYLSSTG
Subjt:  RVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTG

Q85WV9 Uncharacterized protein ycf686.5e-1170Show/hide
Query:  RVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG
        +VRSN DPTFYS V  G  GG    H GSSLLENPYIPYQ MD YLS TG
Subjt:  RVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTT
AAGTATCCCGCCTGGGGAAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG
CTCGTGCCGTAAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAG
GGTCGTGATCCCGCGAGGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCC
ATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTGGATCTAGCCGTAAGAAGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTT
CAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGT
AGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTT
AAGTATCCCGCCTGGGGAAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG
CTCGTGCCGTAAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAG
GGTCGTGATCCCGCGAGGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCC
ATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTGGATCTAGCCGTAAGAAGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTT
CAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGT
AGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA
Protein sequenceShow/hide protein sequence
TKARGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGETLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRLPVISRRKVRMTSSHHAPYALGDTRATMAGTK
GRDPARVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGTRRLDLAVRSAMIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVG
RAPLLQLGRCDYGLDV