; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022932 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022932
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:13967915..13969132
RNA-Seq ExpressionSpg022932
SyntenySpg022932
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT06678.1 Os08g0558501 [Oryza sativa Japonica Group]4.3e-1128.57Show/hide
Query:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQNSPKRLRSIVNQAV----------------WTKPKLGSWKL
        +E    +D  +  +++W IW T  R E++  +  P  L+  + I S++ S  E     Q +P++ + +V+  +                W+KP  GS KL
Subjt:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQNSPKRLRSIVNQAV----------------WTKPKLGSWKL

Query:  NSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRST
        N   S+ E +G+GGIG V+ +  G  I      +        ME +A  +GL           L + +ETD L +  +    T  KSEL     EI    
Subjt:  NSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRST

Query:  SRLPDISFSHCSRSSNTVAHCVAN
            DISF+ C RS N ++HC+AN
Subjt:  SRLPDISFSHCSRSSNTVAHCVAN

EEE69144.1 hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]4.3e-1128.57Show/hide
Query:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQNSPKRLRSIVNQAV----------------WTKPKLGSWKL
        +E    +D  +  +++W IW T  R E++  +  P  L+  + I S++ S  E     Q +P++ + +V+  +                W+KP  GS KL
Subjt:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQNSPKRLRSIVNQAV----------------WTKPKLGSWKL

Query:  NSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRST
        N   S+ E +G+GGIG V+ +  G  I      +        ME +A  +GL           L + +ETD L +  +    T  KSEL     EI    
Subjt:  NSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRST

Query:  SRLPDISFSHCSRSSNTVAHCVAN
            DISF+ C RS N ++HC+AN
Subjt:  SRLPDISFSHCSRSSNTVAHCVAN

TVU49286.1 hypothetical protein EJB05_00593, partial [Eragrostis curvula]1.6e-1024.31Show/hide
Query:  DDLAISAIIMWMIWSTTN----REELLSRERTPDFLIQAISSHISKRENSYLKQ----------NSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKG
        D +A   +++W +W+  N      E +S E +  FL + +   +S R+  Y ++          ++P  +R       W  P  G +K+N   ++N + G
Subjt:  DDLAISAIIMWMIWSTTN----REELLSRERTPDFLIQAISSHISKRENSYLKQ----------NSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKG

Query:  QGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHC
          G+G V+ D++G P+    R++      +  EA A ++G+R          +++ +E+D+  V   L     D+S +     +I+    +L +I     
Subjt:  QGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHC

Query:  SRSSNTVAHCVANLACNL
         R  N VAH +A LAC L
Subjt:  SRSSNTVAHCVANLACNL

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.9e-1130.29Show/hide
Query:  LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLKQNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKK
        LS +++A S +I W IW + NR     E +  ++    ++  I+S+I K     +    +QN    P+   ++    V W+ P    WKLN+ ASW+E++
Subjt:  LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLKQNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKK

Query:  GQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD
          GGIGW++ D  G  +  G  +I +K  I  +E + I+ GL+ I     Q    + +E+DS+EV  ++    VD
Subjt:  GQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.7e-1528.85Show/hide
Query:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWV
        ++  S +DL +  I  W+IW+  N         +   +IQ ++  ++  E+SY  + S   L +++ N+  W  P +  W LN+ ASW++   +GGIGW+
Subjt:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWV

Query:  VHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTV
        +   +G  +  G R +     +K +EA AI+EGLR +T+    +   L +ETDS EV  +L+    D ++     +EI         ++F+   R +N  
Subjt:  VHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTV

Query:  AHCVANLA
        AH +A  A
Subjt:  AHCVANLA

TrEMBL top hitse value%identityAlignment
A0A5B7BU49 RNase H domain-containing protein (Fragment)1.1e-1230.7Show/hide
Query:  WSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKF
        W   N      R R P+ +  A S ++     + ++Q      R  V   VW+ P+ G +KLN  ASW   +  GGIG V+ D  G  I    +QI    
Subjt:  WSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKF

Query:  PIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNLDFVDLRESS
         I   EA+AI+ GL    D   Q    L VE D L V + +     D SEL    D I++         F H  R++N+VAH +A  A            
Subjt:  PIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNLDFVDLRESS

Query:  PSRENEHVFWAPALP
            N+ VFW   LP
Subjt:  PSRENEHVFWAPALP

A0A6J1CQG0 uncharacterized protein LOC1110132169.4e-1230.29Show/hide
Query:  LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLKQNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKK
        LS +++A S +I W IW + NR     E +  ++    ++  I+S+I K     +    +QN    P+   ++    V W+ P    WKLN+ ASW+E++
Subjt:  LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLKQNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKK

Query:  GQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD
          GGIGW++ D  G  +  G  +I +K  I  +E + I+ GL+ I     Q    + +E+DS+EV  ++    VD
Subjt:  GQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD

A0A6J1DNV9 uncharacterized protein LOC1110224038.2e-1628.85Show/hide
Query:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWV
        ++  S +DL +  I  W+IW+  N         +   +IQ ++  ++  E+SY  + S   L +++ N+  W  P +  W LN+ ASW++   +GGIGW+
Subjt:  MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWV

Query:  VHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTV
        +   +G  +  G R +     +K +EA AI+EGLR +T+    +   L +ETDS EV  +L+    D ++     +EI         ++F+   R +N  
Subjt:  VHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTV

Query:  AHCVANLA
        AH +A  A
Subjt:  AHCVANLA

A0A6J5UE59 Reverse transcriptase domain-containing protein3.0e-1029.82Show/hide
Query:  MENLSTDDLAISAII-----MWMIWSTTNREELLSRERTPD----FLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKK
        M  L++ + A  AI      +W IW   N       +  P      L++ +S   + + +    Q  P +  S      W KP LG  K+N  A+W+ ++
Subjt:  MENLSTDDLAISAII-----MWMIWSTTNREELLSRERTPD----FLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKK

Query:  GQGGIGWVVHDSNGSPICFGLR-QIHQKFPIKTMEAIAIVEGLREITDTCYQKNLA-LEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISF
          GG+GWV+ DS G  +C G +  +H    I  ME +AI   L E    C   +L  + VE+DS +  L+L+G     S+L+    +I++  + L  +SF
Subjt:  GQGGIGWVVHDSNGSPICFGLR-QIHQKFPIKTMEAIAIVEGLREITDTCYQKNLA-LEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISF

Query:  SHCSRSSNTVAHCVANLA
            RS N  AH VA  A
Subjt:  SHCSRSSNTVAHCVANLA

A0A7C9A7V4 Uncharacterized protein4.6e-1131.66Show/hide
Query:  AIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGL
        A ++W +W T NR  +  R+R    L               L+ N  +  R       W  P+ G  K+N  AS   + G  G+G VV D NG       
Subjt:  AIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGL

Query:  RQIHQKFPIKTMEAIAIVEGLREITDTCYQKNL-ALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNL
        R     + ++T+EA A++ GL+     C+Q+    LE+ETDS +VA  L+G     +    F  +     +R+P ISFS  SR +N VAH +A LA  L
Subjt:  RQIHQKFPIKTMEAIAIVEGLREITDTCYQKNL-ALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.7e-0522.22Show/hide
Query:  IMWMIWSTTNREELLSRERTPDFLIQAISSHISKREN---SYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG
        ++W IW   N         +P   + +  +      N   S+ K  SP R +   N+  W  P     K N  A ++ +K +   GW++ +  G+PI +G
Subjt:  IMWMIWSTTNREELLSRERTPDFLIQAISSHISKREN---SYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG

Query:  -LRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLAC
         ++  H   P++  E  A++  L++   T  +    + +E D   +  +++G++   S L    ++I    ++   I F    R  N +AH +A   C
Subjt:  -LRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTAAGCACAGACGATTTAGCTATAAGCGCTATCATAATGTGGATGATTTGGTCGACTACGAACAGAGAAGAACTACTCTCAAGAGAAAGAACACCAGATTT
TCTCATTCAAGCAATCAGTAGCCATATTTCAAAAAGGGAGAATTCTTACCTCAAGCAAAATTCCCCAAAAAGATTGAGGAGCATTGTGAATCAGGCGGTATGGACAAAGC
CAAAGCTGGGTAGCTGGAAGCTGAATTCCGTCGCTTCTTGGAACGAGAAGAAAGGCCAAGGTGGTATCGGCTGGGTCGTGCATGATTCGAACGGATCCCCAATTTGTTTT
GGCCTGAGACAAATTCATCAAAAATTCCCCATCAAGACGATGGAAGCAATCGCCATTGTTGAAGGGCTGAGGGAGATAACTGATACCTGCTATCAGAAGAATCTGGCTCT
AGAGGTGGAGACCGACTCTTTGGAAGTTGCCTTGGTTCTGTCCGGCGTGACTGTAGACAAATCGGAGCTGAAGTTGTTCACGGATGAAATTCAAAGGTCCACCTCTCGCT
TGCCGGACATCTCGTTTAGCCATTGTAGTCGCTCATCGAACACAGTAGCCCACTGTGTTGCTAATTTAGCTTGTAATTTGGATTTTGTTGATCTGCGGGAGAGCTCCCCT
TCACGGGAAAATGAGCATGTCTTTTGGGCTCCTGCTTTGCCTTTTTGCTCAGCCGGCTCTTGCAGTCGATCCACGACTCTCATGAAACCTGAGCCACCAATTGAGCCTAA
TCTGCTGTGGAAAATTCAGCAGCGCCTTCGAGCCACGCACTTAAACGCGGCTCTATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTAAGCACAGACGATTTAGCTATAAGCGCTATCATAATGTGGATGATTTGGTCGACTACGAACAGAGAAGAACTACTCTCAAGAGAAAGAACACCAGATTT
TCTCATTCAAGCAATCAGTAGCCATATTTCAAAAAGGGAGAATTCTTACCTCAAGCAAAATTCCCCAAAAAGATTGAGGAGCATTGTGAATCAGGCGGTATGGACAAAGC
CAAAGCTGGGTAGCTGGAAGCTGAATTCCGTCGCTTCTTGGAACGAGAAGAAAGGCCAAGGTGGTATCGGCTGGGTCGTGCATGATTCGAACGGATCCCCAATTTGTTTT
GGCCTGAGACAAATTCATCAAAAATTCCCCATCAAGACGATGGAAGCAATCGCCATTGTTGAAGGGCTGAGGGAGATAACTGATACCTGCTATCAGAAGAATCTGGCTCT
AGAGGTGGAGACCGACTCTTTGGAAGTTGCCTTGGTTCTGTCCGGCGTGACTGTAGACAAATCGGAGCTGAAGTTGTTCACGGATGAAATTCAAAGGTCCACCTCTCGCT
TGCCGGACATCTCGTTTAGCCATTGTAGTCGCTCATCGAACACAGTAGCCCACTGTGTTGCTAATTTAGCTTGTAATTTGGATTTTGTTGATCTGCGGGAGAGCTCCCCT
TCACGGGAAAATGAGCATGTCTTTTGGGCTCCTGCTTTGCCTTTTTGCTCAGCCGGCTCTTGCAGTCGATCCACGACTCTCATGAAACCTGAGCCACCAATTGAGCCTAA
TCTGCTGTGGAAAATTCAGCAGCGCCTTCGAGCCACGCACTTAAACGCGGCTCTATCATAA
Protein sequenceShow/hide protein sequence
MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICF
GLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNLDFVDLRESSP
SRENEHVFWAPALPFCSAGSCSRSTTLMKPEPPIEPNLLWKIQQRLRATHLNAALS