; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg022935 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022935
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:13718381..13722521
RNA-Seq ExpressionSpg022935
SyntenySpg022935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-2540.21Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR
        E+K+ L ++ V + +   +  +   L  R + E    L+QFGT +LV+V+F +E  ++ S+EK   IE+++EGW +V RRKK++ +  +KES  +R+ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
          K+Q+ K KKK+R+ K V EE +DF  P   +TLA++FP RFL D Q E   VV CH ++V+E++ +P  S E       LS F++ DLLSLP
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

KAA0035662.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.2e-2442.6Show/hide
Query:  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESED
        L  +L  ++   L+QFGT + +MV+F +E   K SQEK  SI++++EGW +V  RKK++ +  QKESR +R+ +R  K+Q+ K  KK+RR K V EE +D
Subjt:  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESED

Query:  FFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
        F  P   +TLA++F  RFL D Q E   VV CH ++ +E++ +P  S E      +LS  ++ DLLSLP
Subjt:  FFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]5.9e-2640.72Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR
        E+K+ L ++ V + +   A + ++ L  R + E    L+QFGT + V+VRF +E   + SQEK   IE+++EGWT+V RRKK++ +  QKE R +R+ ++
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
          K+Q+ K KKK+R+ K + EE +DF      +TLA++FP RFL D Q E   VV CH ++ +E++++P  S E      DLS F++ DLLSLP
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-2538.76Show/hide
Query:  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ
        D  +A+M  +L  L+K     DLE    KN             +L  ++   L+QFGT + ++V+F +E  ++ S  K  SIE++NEGW +V RR K++ 
Subjt:  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ

Query:  SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSF
        +  QKES  +R+ +R+ K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ FP RFL D Q E  EV+TCH ++  E++ +P+ S E      +LS F
Subjt:  SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSF

Query:  SIKDLLSLP
        ++ DLLSLP
Subjt:  SIKDLLSLP

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-2539.8Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDS
        E+K+ L ++ V + +   A + ++        + RE   L+QFGT + V+V+F +E   +  QEK  SIE ++EGWT+V RRKK++ +  QKE R +R+ 
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDS

Query:  KRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
        +R  K+Q+ K KKK+++ K + EE +DF      +TLA +FP RFL D Q E  EVV CH +D +E++ +P  S E      DL  F++ DLLSLP
Subjt:  KRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein3.2e-2540.21Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR
        E+K+ L ++ V + +   +  +   L  R + E    L+QFGT +LV+V+F +E  ++ S+EK   IE+++EGW +V RRKK++ +  +KES  +R+ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
          K+Q+ K KKK+R+ K V EE +DF  P   +TLA++FP RFL D Q E   VV CH ++V+E++ +P  S E       LS F++ DLLSLP
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

A0A5A7SWL2 Ty3-gypsy retrotransposon protein3.5e-2442.6Show/hide
Query:  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESED
        L  +L  ++   L+QFGT + +MV+F +E   K SQEK  SI++++EGW +V  RKK++ +  QKESR +R+ +R  K+Q+ K  KK+RR K V EE +D
Subjt:  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESED

Query:  FFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
        F  P   +TLA++F  RFL D Q E   VV CH ++ +E++ +P  S E      +LS  ++ DLLSLP
Subjt:  FFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

A0A5A7TY01 Ty3-gypsy retrotransposon protein3.2e-2538.76Show/hide
Query:  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ
        D  +A+M  +L  L+K     DLE    KN             +L  ++   L+QFGT + ++V+F +E  ++ S  K  SIE++NEGW +V RR K++ 
Subjt:  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ

Query:  SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSF
        +  QKES  +R+ +R+ K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ FP RFL D Q E  EV+TCH ++  E++ +P+ S E      +LS F
Subjt:  SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSF

Query:  SIKDLLSLP
        ++ DLLSLP
Subjt:  SIKDLLSLP

A0A5D3BE72 Ty3-gypsy retrotransposon protein3.2e-2539.8Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDS
        E+K+ L ++ V + +   A + ++        + RE   L+QFGT + V+V+F +E   +  QEK  SIE ++EGWT+V RRKK++ +  QKE R +R+ 
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDS

Query:  KRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
        +R  K+Q+ K KKK+++ K + EE +DF      +TLA +FP RFL D Q E  EVV CH +D +E++ +P  S E      DL  F++ DLLSLP
Subjt:  KRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

A0A5D3BSG5 Uncharacterized protein2.9e-2640.72Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR
        E+K+ L ++ V + +   A + ++ L  R + E    L+QFGT + V+VRF +E   + SQEK   IE+++EGWT+V RRKK++ +  QKE R +R+ ++
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP
          K+Q+ K KKK+R+ K + EE +DF      +TLA++FP RFL D Q E   VV CH ++ +E++++P  S E      DLS F++ DLLSLP
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGCTGATCGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCC
ACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGA
TGGAAAGGAAACTCAATCTCTTAATGAAAGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAATCGAGAAGTGGCTGAGCTGATTCAATTT
GGGACCCTTGATCTCGTAATGGTTCGATTTCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGT
TCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGA
GGTCAAAGCCTGTGGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCA
CTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAA
GGACTTATTGTCACTTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGCTGATCGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCC
ACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGA
TGGAAAGGAAACTCAATCTCTTAATGAAAGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAATCGAGAAGTGGCTGAGCTGATTCAATTT
GGGACCCTTGATCTCGTAATGGTTCGATTTCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGT
TCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGA
GGTCAAAGCCTGTGGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCA
CTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAA
GGACTTATTGTCACTTCCATAG
Protein sequenceShow/hide protein sequence
MLGIEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNREVAELIQF
GTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEA
LEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP