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Spg022954 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022954
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEukaryotic translation initiation factor 3 subunit I
Genome locationscaffold12:31714926..31718942
RNA-Seq ExpressionSpg022954
SyntenySpg022954
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]7.3e-1537.5Show/hide
Query:  VVPLVREFYAGLRE--ENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI
        +VPLVREFYA L +  EN   V+   VS+S   IN V+ +  P++   ++ I+N T   L  +L+ VA  G +W  S +     + S L P   +W HF+
Subjt:  VVPLVREFYAGLRE--ENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI

Query:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIV
        K+ L+PTTH KT+S +R++ L+SM+ G  +N+  ++
Subjt:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIV

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]6.8e-2129.41Show/hide
Query:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI
        +VPLVREFYA L   EEN   V+   VS+S   IN V+ +  P++   ++ I+N T + L  +L+ VA  G +W  S +     + S L P   +W HF+
Subjt:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI

Query:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-------------LYNAQWKDKASTSQATPSLGLTVASP
        K+RL+PTTH KT+S +R++ L+SM+ G  +N+                      S++ +L              L+N    D  + ++     G T ++ 
Subjt:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-------------LYNAQWKDKASTSQATPSLGLTVASP

Query:  LPSIPISGPTTSSEALGFDLKQLDCIEDRL---------------------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEED
         PS       +S+   G  L+QL  +E RL                     + +W Y+KERD  +++   +      P FP FPQ +L   D     E D
Subjt:  LPSIPISGPTTSSEALGFDLKQLDCIEDRL---------------------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEED

Query:  KDDSSE
        KD S+E
Subjt:  KDDSSE

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]2.8e-2230.82Show/hide
Query:  VPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIK
        +PLVREFYA L   EEN   V+   VS+S   IN V+ +  P++   ++ I+N T  +L  +L+ VA  G +W  S +     + S L P   +W HF+K
Subjt:  VPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIK

Query:  NRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-----------LYNAQWKDKASTSQATPSLGLTVASPLPS
        +RL+PTTH K +S +R++ L+SM+ G  +N+                      S++ +L            L+N    D  + ++ T   G T ++  PS
Subjt:  NRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-----------LYNAQWKDKASTSQATPSLGLTVASPLPS

Query:  IPISGPTTSSEALGFDLKQLDCIEDRL----------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEEDKDDSSE
               +SS   G  L+QL  +E RL          + +W Y+KERD  +++   +      P FP FPQ +L   D     E DKD S+E
Subjt:  IPISGPTTSSEALGFDLKQLDCIEDRL----------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEEDKDDSSE

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]2.1e-1727.38Show/hide
Query:  MEIMKKQDFLNEKGFSDSAEDFARKMRLQEEIKGCGICDQNAPASHTRKVAPAEDKVSKVEHRRKCTRYAAATGLSDRIPRFTGSESSKN----------
        +E  KK+     +   +  E+F R+ + +EE       ++N      R++   E+K  K E  R+C +      L++R       E  K           
Subjt:  MEIMKKQDFLNEKGFSDSAEDFARKMRLQEEIKGCGICDQNAPASHTRKVAPAEDKVSKVEHRRKCTRYAAATGLSDRIPRFTGSESSKN----------

Query:  LQSGIKSLKIEVVVPLVREFYAGLREENLSMV--QRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSD
         + G    K      +VR+FY G        V  +R+ VSFS+ DIN++Y++K      GN  I +PT +Q+++ L+++ + G++W  S K V  L    
Subjt:  LQSGIKSLKIEVVVPLVREFYAGLREENLSMV--QRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSD

Query:  LKPEPAMWLHFIKNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRKLL
        L  E  +W++ +K RL+ TTHDKT+S +RVM  Y +++ + +++  ++ + L
Subjt:  LKPEPAMWLHFIKNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRKLL

XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]3.9e-1631.07Show/hide
Query:  SDRIPRFTGSESSKNLQSGIKSLKIEVVVPLVREFYAGLREENLSMVQRK--MVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQ
        S  +P FT        ++  + L I ++  +VR FY G        V  K  +V FS+ DIN++Y++K   +  GN  I +P  +++++ L+ + + G Q
Subjt:  SDRIPRFTGSESSKNLQSGIKSLKIEVVVPLVREFYAGLREENLSMVQRK--MVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQ

Query:  WKESQKKVKFLVPSDLKPEPAMWLHFIKNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRKLLLYNAQWKDKASTS----QATP-SLGLTVASPLP
        W  S K +K L  S L PE  +W++ +K R++PT+HDKT+S +RVM  Y +  G+ ++++ ++       AQ K +   S     A P +LG    +  P
Subjt:  WKESQKKVKFLVPSDLKPEPAMWLHFIKNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRKLLLYNAQWKDKASTS----QATP-SLGLTVASPLP

Query:  SIPISG
        S P +G
Subjt:  SIPISG

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)3.5e-1537.5Show/hide
Query:  VVPLVREFYAGLRE--ENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI
        +VPLVREFYA L +  EN   V+   VS+S   IN V+ +  P++   ++ I+N T   L  +L+ VA  G +W  S +     + S L P   +W HF+
Subjt:  VVPLVREFYAGLRE--ENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI

Query:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIV
        K+ L+PTTH KT+S +R++ L+SM+ G  +N+  ++
Subjt:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIV

A0A2P5BCG4 Uncharacterized protein (Fragment)3.3e-2129.41Show/hide
Query:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI
        +VPLVREFYA L   EEN   V+   VS+S   IN V+ +  P++   ++ I+N T + L  +L+ VA  G +W  S +     + S L P   +W HF+
Subjt:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI

Query:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-------------LYNAQWKDKASTSQATPSLGLTVASP
        K+RL+PTTH KT+S +R++ L+SM+ G  +N+                      S++ +L              L+N    D  + ++     G T ++ 
Subjt:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-------------LYNAQWKDKASTSQATPSLGLTVASP

Query:  LPSIPISGPTTSSEALGFDLKQLDCIEDRL---------------------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEED
         PS       +S+   G  L+QL  +E RL                     + +W Y+KERD  +++   +      P FP FPQ +L   D     E D
Subjt:  LPSIPISGPTTSSEALGFDLKQLDCIEDRL---------------------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEED

Query:  KDDSSE
        KD S+E
Subjt:  KDDSSE

A0A2P5BNT0 Uncharacterized protein (Fragment)9.6e-1334.81Show/hide
Query:  LVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIKNR
        LVREFY  L   +++   V+   V  S+  IN +Y +   L    ++ +++ T  +L  +L+ VA  G +W  S + V   + S L P   +W HF+K+R
Subjt:  LVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIKNR

Query:  LMPTTHDKTISAERVMFLYSMIKGLELNINSIVRK
        L+PTTH K +S ERV+ LYSM+ G  +N+  ++ +
Subjt:  LMPTTHDKTISAERVMFLYSMIKGLELNINSIVRK

A0A2P5DAQ2 Uncharacterized protein2.5e-1332.61Show/hide
Query:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI
        +VPLVREFY  +   +++   ++   V  S   IN ++ +  P++   ++ +++ T  +L  +L+ VA  G +W  S +     + S L P   +W HF+
Subjt:  VVPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFI

Query:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRK
        K+RL+PTTH KT+S E V  LYSM+ G  +N+  ++ +
Subjt:  KNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRK

A0A2P5DXM3 Uncharacterized protein1.3e-2230.82Show/hide
Query:  VPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIK
        +PLVREFYA L   EEN   V+   VS+S   IN V+ +  P++   ++ I+N T  +L  +L+ VA  G +W  S +     + S L P   +W HF+K
Subjt:  VPLVREFYAGLR--EENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFLVPSDLKPEPAMWLHFIK

Query:  NRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-----------LYNAQWKDKASTSQATPSLGLTVASPLPS
        +RL+PTTH K +S +R++ L+SM+ G  +N+                      S++ +L            L+N    D  + ++ T   G T ++  PS
Subjt:  NRLMPTTHDKTISAERVMFLYSMIKGLELNIN---------------------SIVRKLL-----------LYNAQWKDKASTSQATPSLGLTVASPLPS

Query:  IPISGPTTSSEALGFDLKQLDCIEDRL----------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEEDKDDSSE
               +SS   G  L+QL  +E RL          + +W Y+KERD  +++   +      P FP FPQ +L   D     E DKD S+E
Subjt:  IPISGPTTSSEALGFDLKQLDCIEDRL----------KTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQ-DPTKSEEEDKDDSSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCTCACCTGCTCAAGCCACTGCCACACGCGCTCAACCAACCACATCACCACCAAAGAATCCATTCCCTAAAGTCTTTAAGGATGTGGACTTCCAAGCTAGAAT
GGAGATCATGAAAAAACAGGACTTCTTGAACGAAAAGGGATTCTCAGACAGCGCCGAGGACTTTGCGAGGAAGATGCGCCTGCAAGAGGAGATTAAAGGATGTGGGATAT
GCGATCAAAATGCGCCCGCAAGCCATACAAGGAAAGTAGCCCCAGCTGAAGACAAGGTTTCCAAAGTAGAACATAGAAGGAAATGCACCCGATATGCAGCCGCAACTGGG
CTTTCTGACAGAATACCGAGATTCACGGGATCAGAATCGTCCAAAAATCTCCAATCTGGTATCAAATCTCTGAAGATTGAGGTTGTGGTGCCTCTAGTACGTGAGTTTTA
TGCAGGTTTGAGGGAGGAAAACCTTTCGATGGTGCAAAGAAAGATGGTGAGCTTCTCTTCTGTGGACATTAACAAGGTATATCGGGTCAAAGCACCTTTAAACCCAAGAG
GAAACGATGCAATAAAGAATCCCACGGCCAAGCAACTGAAGGAAATACTCAAGATAGTGGCCAGAAAAGGAGTGCAATGGAAGGAGTCACAGAAAAAAGTGAAGTTCTTG
GTACCAAGTGACTTAAAGCCTGAACCAGCAATGTGGCTTCACTTTATCAAAAACCGTCTGATGCCGACTACCCATGATAAGACTATTTCTGCGGAGAGGGTTATGTTTCT
CTACAGCATGATCAAGGGGTTGGAGTTGAACATCAACAGTATAGTTCGGAAGTTGCTGCTCTACAATGCACAGTGGAAAGACAAGGCATCCACTTCCCAGGCTACTCCTT
CACTCGGGTTGACAGTCGCTTCACCACTTCCATCCATTCCTATTTCAGGGCCTACAACATCGTCAGAGGCTCTTGGATTTGATCTTAAGCAGTTAGACTGCATTGAGGAC
CGATTGAAGACATATTGGGTCTATGCCAAAGAGCGAGATGAAGGCATTAGAGAGTTCTATCTCTCTATTGCTCCAAGCATCGCTCCCGTATTTCCTAACTTTCCACAGAG
TTTGCTTCCTCAAGACCCCACAAAATCTGAAGAAGAAGATAAAGATGATTCCTCAGAGGAGGAATATAGGGGTTTTACTATTCCCCTTATGTTTTACATGCTTTGTTTAG
GTGTTTTAGCATTTTGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGCCTCACCTGCTCAAGCCACTGCCACACGCGCTCAACCAACCACATCACCACCAAAGAATCCATTCCCTAAAGTCTTTAAGGATGTGGACTTCCAAGCTAGAAT
GGAGATCATGAAAAAACAGGACTTCTTGAACGAAAAGGGATTCTCAGACAGCGCCGAGGACTTTGCGAGGAAGATGCGCCTGCAAGAGGAGATTAAAGGATGTGGGATAT
GCGATCAAAATGCGCCCGCAAGCCATACAAGGAAAGTAGCCCCAGCTGAAGACAAGGTTTCCAAAGTAGAACATAGAAGGAAATGCACCCGATATGCAGCCGCAACTGGG
CTTTCTGACAGAATACCGAGATTCACGGGATCAGAATCGTCCAAAAATCTCCAATCTGGTATCAAATCTCTGAAGATTGAGGTTGTGGTGCCTCTAGTACGTGAGTTTTA
TGCAGGTTTGAGGGAGGAAAACCTTTCGATGGTGCAAAGAAAGATGGTGAGCTTCTCTTCTGTGGACATTAACAAGGTATATCGGGTCAAAGCACCTTTAAACCCAAGAG
GAAACGATGCAATAAAGAATCCCACGGCCAAGCAACTGAAGGAAATACTCAAGATAGTGGCCAGAAAAGGAGTGCAATGGAAGGAGTCACAGAAAAAAGTGAAGTTCTTG
GTACCAAGTGACTTAAAGCCTGAACCAGCAATGTGGCTTCACTTTATCAAAAACCGTCTGATGCCGACTACCCATGATAAGACTATTTCTGCGGAGAGGGTTATGTTTCT
CTACAGCATGATCAAGGGGTTGGAGTTGAACATCAACAGTATAGTTCGGAAGTTGCTGCTCTACAATGCACAGTGGAAAGACAAGGCATCCACTTCCCAGGCTACTCCTT
CACTCGGGTTGACAGTCGCTTCACCACTTCCATCCATTCCTATTTCAGGGCCTACAACATCGTCAGAGGCTCTTGGATTTGATCTTAAGCAGTTAGACTGCATTGAGGAC
CGATTGAAGACATATTGGGTCTATGCCAAAGAGCGAGATGAAGGCATTAGAGAGTTCTATCTCTCTATTGCTCCAAGCATCGCTCCCGTATTTCCTAACTTTCCACAGAG
TTTGCTTCCTCAAGACCCCACAAAATCTGAAGAAGAAGATAAAGATGATTCCTCAGAGGAGGAATATAGGGGTTTTACTATTCCCCTTATGTTTTACATGCTTTGTTTAG
GTGTTTTAGCATTTTGTTCGTAA
Protein sequenceShow/hide protein sequence
MDASPAQATATRAQPTTSPPKNPFPKVFKDVDFQARMEIMKKQDFLNEKGFSDSAEDFARKMRLQEEIKGCGICDQNAPASHTRKVAPAEDKVSKVEHRRKCTRYAAATG
LSDRIPRFTGSESSKNLQSGIKSLKIEVVVPLVREFYAGLREENLSMVQRKMVSFSSVDINKVYRVKAPLNPRGNDAIKNPTAKQLKEILKIVARKGVQWKESQKKVKFL
VPSDLKPEPAMWLHFIKNRLMPTTHDKTISAERVMFLYSMIKGLELNINSIVRKLLLYNAQWKDKASTSQATPSLGLTVASPLPSIPISGPTTSSEALGFDLKQLDCIED
RLKTYWVYAKERDEGIREFYLSIAPSIAPVFPNFPQSLLPQDPTKSEEEDKDDSSEEEYRGFTIPLMFYMLCLGVLAFCS