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Spg022985 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg022985
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold12:30168443..30169409
RNA-Seq ExpressionSpg022985
SyntenySpg022985
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823597.1 unnamed protein product [Ananas comosus var. bracteatus]1.4e-1260Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
CAD1825915.1 unnamed protein product [Ananas comosus var. bracteatus]2.0e-1158.46Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
KAG6471955.1 hypothetical protein ZIOFF_069408 [Zingiber officinale]2.6e-1148.78Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVI-------IKLRDEVGQLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPE+ E +K +I        KL+ E+ +LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVI-------IKLRDEVGQLKK
KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]1.2e-1151.32Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVLEHSKEVI-------IKLRDEVGQLKK
        CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GCGFF W DPE+ E SK +I        KL+ E+ +LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVLEHSKEVI-------IKLRDEVGQLKK
RZB70552.1 hypothetical protein D0Y65_035499 [Glycine soja]8.9e-1242.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP      K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
TrEMBL top hitse value%identityAlignment
A0A3N6RQH2 GRF-type domain-containing protein2.1e-1147.83Show/hide
Query:  CGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLE-HSKEVIIKLRDEVGQLKKIAQNL
        CGL  +++TSWT  NPGRRF+GCP YKG    C +FDW D  V++   KE +I+ RDE+ +  K+   L
Subjt:  CGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLE-HSKEVIIKLRDEVGQLKKIAQNL
A0A445HAE1 GRF-type domain-containing protein4.3e-1242.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP      K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
A0A445ILI1 GRF-type domain-containing protein1.6e-1142.22Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
        E S      E ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP      K++I+ L  EV +LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRL
A0A6V7NYI1 GRF-type domain-containing protein6.6e-1360Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
A0A6V7P503 GRF-type domain-containing protein9.6e-1258.46Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
        C CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE II+L +++G+LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein5.9e-0640.51Show/hide
Query:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCP--GY-----KGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
        +P   HC   A     +TS T++NP RRFY CP  GY     +G G  CGFF W D E L H  E+     D  G +K+
Subjt:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCP--GY-----KGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKK
AT3G42860.1 zinc knuckle (CCHC-type) family protein2.9e-0860.47Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GCGFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD
AT5G33393.1 unknown protein1.9e-0436.36Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPE-VLEHSKEVIIKLRDEVGQLKK
        C+CG     I SWT  N GRRF+ C  +       GF  W D E      K  +++ RDE+  LK+
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPE-VLEHSKEVIIKLRDEVGQLKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATTAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGCTGTAT
CGTGTAATAATTATAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGT
GTGATCCAGAAGTATTAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGCTGTAT
CGTGTAATAATTATAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSREMPQKLSKIAMDNFEESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVLEHSKEVIIKLRDEVGQLKKIAQNLRRLEWLY
RVIIIVLVGILVIVFGF