CuGenDBv2

Gene ID	Spg023013
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein SDA1
Genome location	scaffold12:30025621..30027031
RNA-Seq Expression	Spg023013
Synteny	Spg023013
Gene Ontology terms	GO:0000055 - ribosomal large subunit export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0015074 - DNA integration (biological process) GO:0030036 - actin cytoskeleton organization (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR007949 - SDA1 domain IPR027312 - Sda1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014500.1 Protein SDA1-like protein [Cucurbita argyrosperma subsp. argyrosperma]

8.3e-64

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV
        LKKRK SDFD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELSTKR++P+K EV
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV

Query:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        HIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_022149440.1 protein SDA1 homolog [Momordica charantia]

1.1e-68

81.08

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Query:  MLKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFE
        ML KRKRSDFD+QLVT DSSLRAL+KL+G V  K   STDGILSNEDF+RIKEL+AKK AK+ALTQHGLLRNGS     AFKI +T+EL TKRV+P+K E
Subjt:  MLKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFE

Query:  VHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        VHIRR+LSK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SNQQKEHKKAMPLAAKRAK+AKTRVDKRKK+QRSGKQFRG+KAWK
Subjt:  VHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_038895112.1 protein SDA1 homolog isoform X1 [Benincasa hispida]

3.7e-64

76.5

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH
        LKKRK SDFD+QLVT +SSLRAL++L+   V K+   TDGILSNEDF+RIKELQAKK AK+ALTQHGLLRNGS      KI NT+ELSTKRV+PAK EVH
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH

Query:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        IRR+++K+EKLALV+AGR +RGKYQA+AA+KQKKTGG SN+QKEHKKAMPLAAKR+KVAK+RVDK+KKNQRSGKQFRG+KAWK
Subjt:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_038895113.1 protein SDA1 homolog isoform X2 [Benincasa hispida]

3.7e-64

76.5

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH
        LKKRK SDFD+QLVT +SSLRAL++L+   V K+   TDGILSNEDF+RIKELQAKK AK+ALTQHGLLRNGS      KI NT+ELSTKRV+PAK EVH
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH

Query:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        IRR+++K+EKLALV+AGR +RGKYQA+AA+KQKKTGG SN+QKEHKKAMPLAAKR+KVAK+RVDK+KKNQRSGKQFRG+KAWK
Subjt:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

XP_038895114.1 protein SDA1 homolog isoform X3 [Benincasa hispida]

3.7e-64

76.5

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH
        LKKRK SDFD+QLVT +SSLRAL++L+   V K+   TDGILSNEDF+RIKELQAKK AK+ALTQHGLLRNGS      KI NT+ELSTKRV+PAK EVH
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS----AFKISNTEELSTKRVNPAKFEVH

Query:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        IRR+++K+EKLALV+AGR +RGKYQA+AA+KQKKTGG SN+QKEHKKAMPLAAKR+KVAK+RVDK+KKNQRSGKQFRG+KAWK
Subjt:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDG0 Protein SDA1

3.4e-63

75.41

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Query:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFEVH
        KKRK SDFD+QLVT DSSLRAL++L+   V K+   TDGILSNEDFQRIK+L+AKK AK ALTQHGLLRN S     A K+ NT+ELS KRV+PAK EVH
Subjt:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFEVH

Query:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        IRR+++K+EKLALV+AGRE+RGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR+KVAK+R+DK+KKNQRSGKQFRG+KAWK
Subjt:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A5D3D6E9 Protein SDA1

3.4e-63

75.41

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Query:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFEVH
        KKRK SDFD+QLVT DSSLRAL++L+   V K+   TDGILSNEDFQRIK+L+AKK AK ALTQHGLLRN S     A K+ NT+ELS KRV+PAK EVH
Subjt:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFEVH

Query:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        IRR+++K+EKLALV+AGRE+RGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR+KVAK+R+DK+KKNQRSGKQFRG+KAWK
Subjt:  IRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1D5Q3 Protein SDA1

5.4e-69

81.08

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Query:  MLKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFE
        ML KRKRSDFD+QLVT DSSLRAL+KL+G V  K   STDGILSNEDF+RIKEL+AKK AK+ALTQHGLLRNGS     AFKI +T+EL TKRV+P+K E
Subjt:  MLKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGS-----AFKISNTEELSTKRVNPAKFE

Query:  VHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        VHIRR+LSK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SNQQKEHKKAMPLAAKRAK+AKTRVDKRKK+QRSGKQFRG+KAWK
Subjt:  VHIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1GQ82 Protein SDA1

4.0e-64

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV
        LKKRK SDFD+Q +T +SSLRAL+KL+  V GK+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELSTKR++P+K EV
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV

Query:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        HIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

A0A6J1JM56 Protein SDA1

3.4e-63

74.46

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Query:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV
        LKKRK SDFD+Q +T +SSLRAL+KL+  V  K+   TDGILSNEDF+RIKEL+AKK AK ALTQHGLLRN      +AFK+ +T+ELSTKR++P+K EV
Subjt:  LKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRN-----GSAFKISNTEELSTKRVNPAKFEV

Query:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        HIRR++SK+EKLALV+AGREDRGKYQA+AAVKQKKTGG SN+QKEHKKAMPLAAKR++VAK+RVDKRKK+QRSGKQFRG+KAWK
Subjt:  HIRRKLSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G13160.1 ARM repeat superfamily protein

2.9e-46

59.22

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Query:  KKRKRSDFDRQLVTCDSSLRALRKLS-GKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK
        KKRK  DFD  L++ D+SLRAL++ +  K    +    DGILSNEDF++IK LQAKK AK AL + G       FK+ N+++LS KRV+PAK E HIR K
Subjt:  KKRKRSDFDRQLVTCDSSLRALRKLS-GKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK

Query:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        L+K+++L LV+AGREDRGKY+++AAVKQKKTGGSSN+QKEH+K MPLAA R+K  K++  K+ KN  SG QFRGRKAWK
Subjt:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

AT4G31520.1 SDA1 family protein

2.7e-44

57.54

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Query:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKT-LGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK
        KKRK  DFD  L+  D+SLRAL++ +     +T     DGILSNEDF++IKE++ KK AK AL + GL       K+ ++++LS K VNPAK E HIR+K
Subjt:  KKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKT-LGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRK

Query:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK
        L K+E+L LV+AGREDRGKY+++ A+KQKKTGGSSN+QKEHKK MPLAA R+K  K +  K+ KN  SG QFRGRKAWK
Subjt:  LSKDEKLALVRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

Sequences

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CDS sequence

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ATGCTGAAGAAAAGGAAACGTTCCGATTTTGACCGACAACTTGTTACTTGCGATTCAAGCCTTCGAGCATTGAGGAAATTAAGTGGCAAAGTCGTAGGAAAAACGTTAGG
ATCAACTGACGGCATTCTTTCCAATGAAGACTTCCAAAGGATCAAGGAATTACAGGCAAAGAAAGCAGCCAAAGATGCTTTGACTCAACATGGGTTGCTGAGAAATGGTT
CTGCATTTAAGATTTCAAATACTGAAGAATTGAGTACAAAGCGAGTGAATCCTGCCAAGTTCGAGGTTCATATCCGGAGAAAGCTAAGCAAGGATGAAAAACTAGCATTA
GTGAGGGCCGGAAGAGAGGATAGAGGAAAGTACCAAGCACAGGCTGCTGTCAAACAAAAGAAGACGGGAGGTTCAAGCAATCAGCAGAAAGAACACAAGAAAGCCATGCC
TCTAGCTGCGAAGCGAGCTAAAGTAGCAAAAACTCGAGTCGACAAGAGGAAGAAGAATCAACGTTCAGGAAAACAGTTTAGAGGGAGGAAGGCCTGGAAATAA

mRNA sequence

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Protein sequence

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MLKKRKRSDFDRQLVTCDSSLRALRKLSGKVVGKTLGSTDGILSNEDFQRIKELQAKKAAKDALTQHGLLRNGSAFKISNTEELSTKRVNPAKFEVHIRRKLSKDEKLAL
VRAGREDRGKYQAQAAVKQKKTGGSSNQQKEHKKAMPLAAKRAKVAKTRVDKRKKNQRSGKQFRGRKAWK

Spg023013 (gene) of Sponge gourd (cylindrica) v1 genome