; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023038 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023038
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold12:31361625..31363597
RNA-Seq ExpressionSpg023038
SyntenySpg023038
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8690516.1 Detected protein of unknown function [Hibiscus syriacus]3.0e-1432.84Show/hide
Query:  KSVNAQVVREFYANIDKEDCFQVIVRGVERMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDV
        + VNA +++EFYAN+   + + V    V + LP T ++TVS +R+LL  +IL   SI + KIIV +I  C K  V  L FPN IT L ++  VP+++ D 
Subjt:  KSVNAQVVREFYANIDKEDCFQVIVRGVERMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDV

Query:  I---LFDKGIIDTPNLVRLQRTQEARQGGLV------YDINTILEQLALSASR-QEFAERQAL---TFWNYVRSRDANLKKALEENFSKPYPALPIFPDD
        I   LF       P L+  +   + ++  +       +D    L+ L   A R Q+  ++  +   TF+ YV+ RD  +  A  E         P FPD 
Subjt:  I---LFDKGIIDTPNLVRLQRTQEARQGGLV------YDINTILEQLALSASR-QEFAERQAL---TFWNYVRSRDANLKKALEENFSKPYPALPIFPDD

Query:  LLNP
        LL+P
Subjt:  LLNP

KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]3.6e-1524.58Show/hide
Query:  LPYDHFVNNSARAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPKSVNAQVVREFYANIDKEDCFQVIVRGVE------------
        + +  F N+ A+A++     R+  FE GF       G     +   +    W  F   P SVNA +V+EFYANI K +   + VRG +            
Subjt:  LPYDHFVNNSARAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPKSVNAQVVREFYANIDKEDCFQVIVRGVE------------

Query:  ---------------------------------------------------------------RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNE
                                                                       +++PT+ ++TVS  R+LL  +++ S  IDVG+IIV +
Subjt:  ---------------------------------------------------------------RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNE

Query:  ISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEARQGGLVY-------DINTILEQLAL-SASRQEFAERQAL-----
        +  C  KK   L FPN IT LC++  V EN  D IL     I    L  L   +  +    V+       + N  +  LAL  A  Q  A+  AL     
Subjt:  ISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEARQGGLVY-------DINTILEQLAL-SASRQEFAERQAL-----

Query:  TFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLLNPWIPPPLVKREGDEEEDPGQE
         F+ YV+ RD  ++   +E         P FPD++L  +      + E D  + P  +
Subjt:  TFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLLNPWIPPPLVKREGDEEEDPGQE

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]9.1e-1932.97Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQR---TQEARQ--
        R+LPTT   TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A  P    +  L + G ID   + R+ +   T+  +Q  
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQR---TQEARQ--

Query:  -------------GGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
                     G ++  +  + ++L+    +Q       +   +Q   FW Y + RD  LKKAL+ NF++P P  P FP ++L
Subjt:  -------------GGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]6.9e-1933.69Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEAR------
        R+LPTT   TVS++R+LL +++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A  P    +  L   G ID   + R+  TQE +      
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEAR------

Query:  --------------QGGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
                       G ++  +  + ++L+    +Q       +   +Q   FW Y + RD  LKKAL+ NF++P P  P FP +LL
Subjt:  --------------QGGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]1.8e-1936.78Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRL-------------
        R+LPTT    VS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A    NE    L + G ID   + R+             
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRL-------------

Query:  -QRTQEARQGGLVYDINTILEQLALSASRQEFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
          R   A       D+   L+ L    S+QE   +Q   FW Y + RD  LKKAL+ NF++P P  P FP ++L
Subjt:  -QRTQEARQGGLVYDINTILEQLALSASRQEFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)4.4e-1932.97Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQR---TQEARQ--
        R+LPTT   TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A  P    +  L + G ID   + R+ +   T+  +Q  
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQR---TQEARQ--

Query:  -------------GGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
                     G ++  +  + ++L+    +Q       +   +Q   FW Y + RD  LKKAL+ NF++P P  P FP ++L
Subjt:  -------------GGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

A0A2P5CEY2 Uncharacterized protein3.4e-1933.69Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEAR------
        R+LPTT   TVS++R+LL +++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A  P    +  L   G ID   + R+  TQE +      
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEAR------

Query:  --------------QGGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
                       G ++  +  + ++L+    +Q       +   +Q   FW Y + RD  LKKAL+ NF++P P  P FP +LL
Subjt:  --------------QGGLVYDINTILEQLALSASRQ-------EFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

A0A2P5DXM3 Uncharacterized protein8.8e-2036.78Show/hide
Query:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRL-------------
        R+LPTT    VS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A    NE    L + G ID   + R+             
Subjt:  RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRL-------------

Query:  -QRTQEARQGGLVYDINTILEQLALSASRQEFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL
          R   A       D+   L+ L    S+QE   +Q   FW Y + RD  LKKAL+ NF++P P  P FP ++L
Subjt:  -QRTQEARQGGLVYDINTILEQLALSASRQEFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLL

A0A6A2ZG25 Uncharacterized protein1.5e-1432.84Show/hide
Query:  KSVNAQVVREFYANIDKEDCFQVIVRGVERMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDV
        + VNA +++EFYAN+   + + V    V + LP T ++TVS +R+LL  +IL   SI + KIIV +I  C K  V  L FPN IT L ++  VP+++ D 
Subjt:  KSVNAQVVREFYANIDKEDCFQVIVRGVERMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDV

Query:  I---LFDKGIIDTPNLVRLQRTQEARQGGLV------YDINTILEQLALSASR-QEFAERQAL---TFWNYVRSRDANLKKALEENFSKPYPALPIFPDD
        I   LF       P L+  +   + ++  +       +D    L+ L   A R Q+  ++  +   TF+ YV+ RD  +  A  E         P FPD 
Subjt:  I---LFDKGIIDTPNLVRLQRTQEARQGGLV------YDINTILEQLALSASR-QEFAERQAL---TFWNYVRSRDANLKKALEENFSKPYPALPIFPDD

Query:  LLNP
        LL+P
Subjt:  LLNP

A0A6A3BU96 Uncharacterized protein1.7e-1524.58Show/hide
Query:  LPYDHFVNNSARAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPKSVNAQVVREFYANIDKEDCFQVIVRGVE------------
        + +  F N+ A+A++     R+  FE GF       G     +   +    W  F   P SVNA +V+EFYANI K +   + VRG +            
Subjt:  LPYDHFVNNSARAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPKSVNAQVVREFYANIDKEDCFQVIVRGVE------------

Query:  ---------------------------------------------------------------RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNE
                                                                       +++PT+ ++TVS  R+LL  +++ S  IDVG+IIV +
Subjt:  ---------------------------------------------------------------RMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNE

Query:  ISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEARQGGLVY-------DINTILEQLAL-SASRQEFAERQAL-----
        +  C  KK   L FPN IT LC++  V EN  D IL     I    L  L   +  +    V+       + N  +  LAL  A  Q  A+  AL     
Subjt:  ISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLVRLQRTQEARQGGLVY-------DINTILEQLAL-SASRQEFAERQAL-----

Query:  TFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLLNPWIPPPLVKREGDEEEDPGQE
         F+ YV+ RD  ++   +E         P FPD++L  +      + E D  + P  +
Subjt:  TFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLLNPWIPPPLVKREGDEEEDPGQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAAGGGTTCAGCCGTTGGACAACGCATAGTTATAGGCGATTGGAATTCACTATTTTACCGAGAAGGCAAGAAAAGCGGGCTGAAGATCAAGAAGCTGTACAAAA
GGTTGTGGAAGACGTTGCTGCCACAGTGGTTGAAGAAGATCCGCAGGAACTAGAGGAACAAAATCCAGAGCAGACTAAGCCGAGAGTGGCTGATATAGAAAGAGTTCAAG
AAGAGAATACCGAGGAAGTTCAAGAAAGGCAGACCGAAGATGTGCAAGAAGAACAGATAGAGGTTGCACCTGAAGAAGGTAACGAGCAAGAACAGGAGGCTCGAGTGGAG
GTGATCATGCCGGAAGTGGCCAAACGTCGCCGCATTAAGAGAAAAGCGGGCCGCATCAAGAAAGAAGAGTGTGAGAAGAAGGAGGCTGAGGAAAAAGTAAGAGAAGAAGC
AGAGAAAAAGGCTGAGGAAGAGCGGTTGCTCAAACAAAGGGCGAAAAAGGGCAAAGGTGTTGCTGAAGCATCGGAAGAACCTGATGAGATAGAAGAGCCACAGTTGCCGT
ATGATCACTTCGTTAACAATTCTGCCAGAGCAAAATATGCTGAGCTGCTGAAAAGAGATTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCCGCATTTTTTGAGGACC
GGCATTGCAGACCACGGTTGGGAGTTGTTTTGTGCAAAGCCTAAGTCTGTAAACGCACAGGTGGTGCGCGAATTTTATGCAAATATTGACAAGGAAGATTGTTTCCAAGT
GATTGTTCGAGGAGTCGAAAGGATGCTTCCAACGACTCGTGACTCAACGGTCTCTAGGGAACGGGTTCTTCTGGCTTTTGCGATTTTGCGGTCTCTCAGCATTGATGTAG
GGAAGATTATTGTTAATGAGATATCTGGATGTTGGAAGAAGAAGGTGGGGAAACTGTTTTTCCCGAATACCATTACCATGCTTTGCAAGCGAGCAGGGGTTCCAGAGAAT
GAAGGAGATGTCATTTTATTTGACAAGGGAATCATTGACACGCCTAACTTGGTACGGCTTCAGCGTACGCAAGAGGCACGTCAGGGTGGGCTTGTCTACGACATCAACAC
GATTTTAGAACAACTTGCACTGTCGGCCAGCAGGCAAGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAGAAGTCGTGATGCCAACTTGAAGAAGGCCC
TAGAGGAAAATTTTTCCAAACCTTATCCGGCCTTACCCATATTCCCTGATGACCTACTGAACCCCTGGATTCCGCCACCGCTTGTCAAGAGAGAAGGAGATGAAGAAGAA
GATCCTGGTCAGGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGAAGGGTTCAGCCGTTGGACAACGCATAGTTATAGGCGATTGGAATTCACTATTTTACCGAGAAGGCAAGAAAAGCGGGCTGAAGATCAAGAAGCTGTACAAAA
GGTTGTGGAAGACGTTGCTGCCACAGTGGTTGAAGAAGATCCGCAGGAACTAGAGGAACAAAATCCAGAGCAGACTAAGCCGAGAGTGGCTGATATAGAAAGAGTTCAAG
AAGAGAATACCGAGGAAGTTCAAGAAAGGCAGACCGAAGATGTGCAAGAAGAACAGATAGAGGTTGCACCTGAAGAAGGTAACGAGCAAGAACAGGAGGCTCGAGTGGAG
GTGATCATGCCGGAAGTGGCCAAACGTCGCCGCATTAAGAGAAAAGCGGGCCGCATCAAGAAAGAAGAGTGTGAGAAGAAGGAGGCTGAGGAAAAAGTAAGAGAAGAAGC
AGAGAAAAAGGCTGAGGAAGAGCGGTTGCTCAAACAAAGGGCGAAAAAGGGCAAAGGTGTTGCTGAAGCATCGGAAGAACCTGATGAGATAGAAGAGCCACAGTTGCCGT
ATGATCACTTCGTTAACAATTCTGCCAGAGCAAAATATGCTGAGCTGCTGAAAAGAGATTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCCGCATTTTTTGAGGACC
GGCATTGCAGACCACGGTTGGGAGTTGTTTTGTGCAAAGCCTAAGTCTGTAAACGCACAGGTGGTGCGCGAATTTTATGCAAATATTGACAAGGAAGATTGTTTCCAAGT
GATTGTTCGAGGAGTCGAAAGGATGCTTCCAACGACTCGTGACTCAACGGTCTCTAGGGAACGGGTTCTTCTGGCTTTTGCGATTTTGCGGTCTCTCAGCATTGATGTAG
GGAAGATTATTGTTAATGAGATATCTGGATGTTGGAAGAAGAAGGTGGGGAAACTGTTTTTCCCGAATACCATTACCATGCTTTGCAAGCGAGCAGGGGTTCCAGAGAAT
GAAGGAGATGTCATTTTATTTGACAAGGGAATCATTGACACGCCTAACTTGGTACGGCTTCAGCGTACGCAAGAGGCACGTCAGGGTGGGCTTGTCTACGACATCAACAC
GATTTTAGAACAACTTGCACTGTCGGCCAGCAGGCAAGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAGAAGTCGTGATGCCAACTTGAAGAAGGCCC
TAGAGGAAAATTTTTCCAAACCTTATCCGGCCTTACCCATATTCCCTGATGACCTACTGAACCCCTGGATTCCGCCACCGCTTGTCAAGAGAGAAGGAGATGAAGAAGAA
GATCCTGGTCAGGAGGATTGA
Protein sequenceShow/hide protein sequence
MIEGFSRWTTHSYRRLEFTILPRRQEKRAEDQEAVQKVVEDVAATVVEEDPQELEEQNPEQTKPRVADIERVQEENTEEVQERQTEDVQEEQIEVAPEEGNEQEQEARVE
VIMPEVAKRRRIKRKAGRIKKEECEKKEAEEKVREEAEKKAEEERLLKQRAKKGKGVAEASEEPDEIEEPQLPYDHFVNNSARAKYAELLKRDFLFERGFSGDLPHFLRT
GIADHGWELFCAKPKSVNAQVVREFYANIDKEDCFQVIVRGVERMLPTTRDSTVSRERVLLAFAILRSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGVPEN
EGDVILFDKGIIDTPNLVRLQRTQEARQGGLVYDINTILEQLALSASRQEFAERQALTFWNYVRSRDANLKKALEENFSKPYPALPIFPDDLLNPWIPPPLVKREGDEEE
DPGQED