; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023056 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023056
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationscaffold12:30854910..30857051
RNA-Seq ExpressionSpg023056
SyntenySpg023056
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605829.1 Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia]7.4e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
XP_022958635.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata]7.4e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]6.7e-0563.41Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PPSH+P E+  NI +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]5.6e-0460.98Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PPS +P E+  NI +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
TrEMBL top hitse value%identityAlignment
A0A0V0HDL0 Mediator of RNA polymerase II transcription subunit 217.9e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
A0A6J1H2M0 Mediator of RNA polymerase II transcription subunit 213.6e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
A0A6J1K432 Mediator of RNA polymerase II transcription subunit 213.6e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
A0A6N2BME2 Mediator of RNA polymerase II transcription subunit 217.9e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
M1BD21 Mediator of RNA polymerase II transcription subunit 217.9e-0458.54Show/hide
Query:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
        +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Subjt:  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTGGAATTTTTCTGGGTTTATAGAATAGATGACGGGCGGTCTGAATTTGAAAGAAAAATTCGTGCGCGGTTCATGTTAGCGGCTCACTATGTATTTGATACAGA
TGCATTGATCCAAAGCATCCATCCAAAATCTCAGCAATCCAAGAGGATAGCGAGTGTCCGTGGTGGTGGTGTTCGTTGGGAGAAGAAAGTACGTGAATTGGAGCATCGTG
CTATTTTCGGTCTTCAATTCGTAAATTTTAATCCTTCAGCTTTAGCTTTCATCACATTTGAGACATTACAAAGATATACTCATCCAATTCGCTTATCCCCTAATTACCCC
GGACCGCCATCTCACAAACCTATAGAGAACCGTACAAATATTGGGCAGCTAAGCATGTGTGAATTATTTATTCGATGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTGGAATTTTTCTGGGTTTATAGAATAGATGACGGGCGGTCTGAATTTGAAAGAAAAATTCGTGCGCGGTTCATGTTAGCGGCTCACTATGTATTTGATACAGA
TGCATTGATCCAAAGCATCCATCCAAAATCTCAGCAATCCAAGAGGATAGCGAGTGTCCGTGGTGGTGGTGTTCGTTGGGAGAAGAAAGTACGTGAATTGGAGCATCGTG
CTATTTTCGGTCTTCAATTCGTAAATTTTAATCCTTCAGCTTTAGCTTTCATCACATTTGAGACATTACAAAGATATACTCATCCAATTCGCTTATCCCCTAATTACCCC
GGACCGCCATCTCACAAACCTATAGAGAACCGTACAAATATTGGGCAGCTAAGCATGTGTGAATTATTTATTCGATGTGATTGA
Protein sequenceShow/hide protein sequence
MFLEFFWVYRIDDGRSEFERKIRARFMLAAHYVFDTDALIQSIHPKSQQSKRIASVRGGGVRWEKKVRELEHRAIFGLQFVNFNPSALAFITFETLQRYTHPIRLSPNYP
GPPSHKPIENRTNIGQLSMCELFIRCD