CuGenDBv2

Gene ID	Spg023070
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold12:28582600..28584684
RNA-Seq Expression	Spg023070
Synteny	Spg023070
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.1e-28

62.12

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Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR   FQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K++S VSSRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

4.1e-29

62.88

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Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR LVFQR+SMA  EEENQC MST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M + + K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.5e-28

62.12

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Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR  VFQR+S+   EEENQC  ST TR SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+VK F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.5e-28

62.12

Show/hide

Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

9.2e-29

62.12

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Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTS+FD IKP TTR LVFQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMQ5 Retrotransposon gag protein

1.0e-28

62.12

Show/hide

Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR   FQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K++S VSSRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

A0A5A7SZJ7 Retrotransposon gag protein

2.0e-29

62.88

Show/hide

Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR LVFQR+SMA  EEENQC MST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M + + K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

A0A5A7TGM1 Retrotransposon gag protein

1.7e-28

62.12

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Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR  VFQR+S+   EEENQC  ST TR SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+VK F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

A0A5A7TQ06 Retrotransposon gag protein

1.7e-28

62.12

Show/hide

Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

A0A5D3BBF9 Gag protease polyprotein

4.5e-29

62.12

Show/hide

Query:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE
        Y   EEVDN  + +QRTS+FD IKP TTR LVFQR+SMA  EEENQC  ST  R SAF+ LS+ST KK R STS FDRLK+ +DQ QR+M +L+ K F E
Subjt:  YIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQRKMDNLEVKLFDE

Query:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV
         + D+K+ S V SRMKRK SV INTE GSL V
Subjt:  VSCDEKLQSIVSSRMKRKFSVLINTEAGSLKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAATGAAACCTTCTCCAAAAATTTCCAGAAAAAGGAAAAAGAAAACTTTGCAACTTCCTACTACATCGACGTAGAAGAGGTTGACAATTTCAAGAAGAGTGAACA
AAGGACTTCCGTCTTCGATGGCATCAAGCCTTCAACCACTCGTCCTTTGGTATTCCAAAGAATGAGTATGGCTGCGATAGAAGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAATGCTAAGTGTCTCCACATTGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAGCAGACGATCAACCTCAAAGA
AAGATGGATAACTTAGAGGTGAAACTGTTTGATGAAGTAAGTTGTGACGAGAAGCTTCAAAGTATTGTCTCGTCACGTATGAAAAGGAAGTTCTCTGTTCTCATAAATAC
AGAAGCTGGTTCTTTGAAGGTTCTTCTCGCTGCTACGCTGCTTGTTCCTTCTCTCCAAGTTCGAAGGTTCTCGTTGCTTCGCTGCAGTCTCTTGTTTCCAAGTTCGAAGG
TTCTCTCACACTATTTCGCTGCTATTTCTTCCTTCCAAGTTCAAAGACGTTTCTTCGTTGCTGTTATTTCCCTCCAAGTTCAAAGGTTCTCTCACGCTGCTACACTGCTA
GTTCCTTTCTCTCCAAGTTCGAAAAGTTCGAAGGTTCTCGTTGCTAAGCTACTTGTTCCTTTATCTCCAAGGATGATCGTGCAAGCTGCTGTTCGATTCAAGTTCGAGTT
TTCCTCGCTTCGAGTATTCCAAGTTCAAGCTTTTATCACTCCAAGTACTATAAGTTCAAGGTTGGGGCTTTGCTCATTTCGAGTTCAAGTTCGAGTTTTCCTCACTTCAA
GTACTTCAAGTTCAAGTTCAAGCTTTGCTCGTTTCAGGTTCAAGTTTGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAATTTGGGGCTTCTCTCCTTTCAACTTCAAG
TTCGAGCTATCCTCACTTCAAGTACTCCAAGTTCAAGTTAAGGGTTTTGCTCGGCTTAAGTTTAAATTCGAGCTTTCATCAGTTCAAGTACTTCAAGTTCAAGTTCAAGG
ATTCGCTTGGTTTCGGTTTCAAGGTTGGAAGCTAATCGACGACCTCCTTCGCTTTATCTTCAAACTTGGCGGTTGGCGGCCTCAATCGCTTCGTCTTCAAACTCGGCGGT
TGAAGGCCTCGTTCGCTTCGTCTTCAAACTCGACGATTGAAGGCCTCGTTCGCTTCGTCTTCAAACTCTAA

mRNA sequence

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Protein sequence

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MLNETFSKNFQKKEKENFATSYYIDVEEVDNFKKSEQRTSVFDGIKPSTTRPLVFQRMSMAAIEEENQCSMSTSTRPSAFQMLSVSTLKKSRSSTSVFDRLKVADDQPQR
KMDNLEVKLFDEVSCDEKLQSIVSSRMKRKFSVLINTEAGSLKVLLAATLLVPSLQVRRFSLLRCSLLFPSSKVLSHYFAAISSFQVQRRFFVAVISLQVQRFSHAATLL
VPFSPSSKSSKVLVAKLLVPLSPRMIVQAAVRFKFEFSSLRVFQVQAFITPSTISSRLGLCSFRVQVRVFLTSSTSSSSSSFARFRFKFELSSLQVLQVQIWGFSPFNFK
FELSSLQVLQVQVKGFARLKFKFELSSVQVLQVQVQGFAWFRFQGWKLIDDLLRFIFKLGGWRPQSLRLQTRRLKASFASSSNSTIEGLVRFVFKL

Spg023070 (gene) of Sponge gourd (cylindrica) v1 genome