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Spg023072 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023072
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationscaffold12:28655370..28659747
RNA-Seq ExpressionSpg023072
SyntenySpg023072
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605829.1 Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia]7.2e-2492.75Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNC+ LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]6.1e-2391.3Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFD LVAALPLSDGGEEEQLKRIAEL  ENDVVGQELQKQL+AAEKEL QVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
XP_022153730.1 mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]4.2e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
XP_022958635.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata]4.2e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
XP_023532119.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo]4.2e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 212.9e-2391.3Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFD LVAALPLSDGGEEEQLKRIAEL  ENDVVGQELQKQL+AAEKEL QVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 218.5e-2389.86Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFD LVAALPLSDGGEEEQLKRIAEL  ENDVVGQELQKQL+AAE+EL QVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 212.0e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
A0A6J1H2M0 Mediator of RNA polymerase II transcription subunit 212.0e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
A0A6J1K432 Mediator of RNA polymerase II transcription subunit 212.0e-2494.2Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFDVLVAALPLSDGGEEEQLKRIAEL  END VGQELQKQLEAAEKELKQVQELFSQVADNCL LKKAD
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 216.3e-2382.61Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFD LVAALPLS+GGE  QLKRIAEL VEND+VGQELQKQLEAAEKELKQVQELF Q ADNCL +KK +
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 214.5e-2482.61Show/hide
Query:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD
        QFD LVAALPLS+GGE  QLKRIAEL VEND+VGQELQKQLEAAEKELKQVQELF Q ADNCL +KK +
Subjt:  QFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCATCTCGACGCTGCGACAGCTCCAGGGGCAGAATGGTCTTTTTACGCTCCGGTTTTGCTCGTTTAAGCCCCGAATCGCTTTCGAAGCTCCAGCCGAAGAATAG
TGGGAAAGATCACGGTGGTCGTCCATGGCTTGATCATGTAGAGAAACTTCCAACGGTATGCTTGAATTCAGATCTTCAAAGAGAAAAAACAGAGGAATCTAGAATTTCCG
ATAAATGCGACCACATTTCTGGCAAGGCAAAAATCAATTGCGACCGCATTTTTGGACAGATGAAGGCAGTTCCAAGTCCGTCGCGGGTCGTTTGGGACCTTGCTTCATTT
ATATGCAATACAATTGAACATATGTACTTTTTTAAAAATTATTATTGTGATTACCATTTGGTGCAGTTCGATGTATTGGTTGCAGCATTGCCTCTATCTGATGGGGGTGA
AGAAGAGCAGTTGAAAAGGATTGCAGAACTACATGTTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAAGAATTAAAACAGGTTCAGG
AGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAAGTTGAAGAAAGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCATCTCGACGCTGCGACAGCTCCAGGGGCAGAATGGTCTTTTTACGCTCCGGTTTTGCTCGTTTAAGCCCCGAATCGCTTTCGAAGCTCCAGCCGAAGAATAG
TGGGAAAGATCACGGTGGTCGTCCATGGCTTGATCATGTAGAGAAACTTCCAACGGTATGCTTGAATTCAGATCTTCAAAGAGAAAAAACAGAGGAATCTAGAATTTCCG
ATAAATGCGACCACATTTCTGGCAAGGCAAAAATCAATTGCGACCGCATTTTTGGACAGATGAAGGCAGTTCCAAGTCCGTCGCGGGTCGTTTGGGACCTTGCTTCATTT
ATATGCAATACAATTGAACATATGTACTTTTTTAAAAATTATTATTGTGATTACCATTTGGTGCAGTTCGATGTATTGGTTGCAGCATTGCCTCTATCTGATGGGGGTGA
AGAAGAGCAGTTGAAAAGGATTGCAGAACTACATGTTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAAGAATTAAAACAGGTTCAGG
AGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAAGTTGAAGAAAGCAGATTGA
Protein sequenceShow/hide protein sequence
MAASRRCDSSRGRMVFLRSGFARLSPESLSKLQPKNSGKDHGGRPWLDHVEKLPTVCLNSDLQREKTEESRISDKCDHISGKAKINCDRIFGQMKAVPSPSRVVWDLASF
ICNTIEHMYFFKNYYCDYHLVQFDVLVAALPLSDGGEEEQLKRIAELHVENDVVGQELQKQLEAAEKELKQVQELFSQVADNCLKLKKAD