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Spg023074 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023074
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:30842354..30843253
RNA-Seq ExpressionSpg023074
SyntenySpg023074
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG54013.1 hypothetical protein EZV62_019269 [Acer yangbiense]4.3e-3336.93Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        MG N F  +F+N  D++ +++GGPW FDK L+++ E  G  ++++ +FRYV FWI +H+LP+ C++R+    LG L+G  +++D  E        +R++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHEYGDWMRNMTTPTS
         +D+  PLKRGL + +G   +   V I YER+P+FCY CG IGH+  +C     ++      ++G WMR ++   S
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHEYGDWMRNMTTPTS

XP_015382410.1 uncharacterized protein LOC107175497 [Citrus sinensis]2.8e-3240.59Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G N F+ KF    DK+ V+ GGPW+FD AL+++ EPKG   I+N  F +  FW+H+ ++P+  M R   + LG  IGS ED+D D++        RL++
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT
         +DITKPL++ L +    +     + I YER+PDFC+ CG+IGH   EC E +  P+++  YG WM+  T
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]9.7e-3333.03Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G N ++  F++  +K  V+  GPW F+K+L+++  P   ++  +  F +  FWI IH++P  C+S + A  LG  +G  E+++ D  D      +R++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQ---VDPEEEHEYGDWMR------NMTTPTSPHVYRSPTYRANYGWNKG
        K+D++KPL+RG+ ++  +  ++ W  + YE++PDFCY+CG IGH   ECE +   V      +YGDW+R      +++ P     +R   +   +  N G
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQ---VDPEEEHEYGDWMR------NMTTPTSPHVYRSPTYRANYGWNKG

Query:  RGRGRGMRSYDWRQTKLNYRN
        RG GRG    DWR+   N+R+
Subjt:  RGRGRGMRSYDWRQTKLNYRN

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.0e-3435.03Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G+N FL  F    D   V+K GPW FDKALI++++P     IS  EF  V FWIH+ DLPM  +++  A  LGN IG+F DVD +E       +LR++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECE-----NQVDPEEEHEYGDWMRNMTTPTSPHVYR---SPTYRANYGWNKGR
         +DITKPL+RG+ I +       W+ I YER+PDFCY CG+IGH   +C+      Q D     EYG W+R + +       R   SP    + G +   
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECE-----NQVDPEEEHEYGDWMRNMTTPTSPHVYR---SPTYRANYGWNKGR

Query:  GRGRGMRSYDWRQTKLNYRNQKNEYHRSTAGETAGKQAGDIRDDRSKSRTDETGKKLESHSSTVPTANKVSDDKTKGKEKAGMSEEQRQEKTKD
         + RG+      +TK     Q N+       + A +Q GD     +  R   TG  L   S++   +       ++G  K  MS+   + K KD
Subjt:  GRGRGMRSYDWRQTKLNYRNQKNEYHRSTAGETAGKQAGDIRDDRSKSRTDETGKKLESHSSTVPTANKVSDDKTKGKEKAGMSEEQRQEKTKD

XP_024955847.1 uncharacterized protein LOC112498636 [Citrus sinensis]2.8e-3240.59Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G N F+ KF    DK+ V+ GGPW+FD AL+++ EPKG   I+N  F +  FW+H+ ++P+  M R   + LG  IGS E++D DE+        RL++
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT
         +DITKPL++ L +    +     + I YER+PDFC+ CG+IGH   EC E +  P+++  YG WM+  T
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT

TrEMBL top hitse value%identityAlignment
A0A1S8AC25 CCHC-type domain-containing protein (Fragment)8.8e-3240.35Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G N F+ KF +  DK  ++ GGPW+FD+ALI + EP G   I   +F +V FW+ IHD+P++CMS+  A  LG +IG  E+V+ D         LRL++
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTK-AEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT
         +DITKPLK+ + +    + A++  +++ YER+PDFC+ CG IGH   EC   +   ++E  YG W++  T
Subjt:  KLDITKPLKRGLMIRVGTK-AEEAWVKITYERMPDFCYKCGIIGHVKDEC-ENQVDPEEEHEYGDWMRNMT

A0A2Z6NZV1 Uncharacterized protein8.8e-3237.82Show/hide
Query:  NTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQVKLD
        N FL +F   +D + V++ GPW+FD+ L+I+    GE + S+ +   V FW+ ++DLP    S   A+ LGN++G+FE+VD  + +R G   LRL+  LD
Subjt:  NTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQVKLD

Query:  ITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQVDPEEEH---------EYGDWMRNMTTPTSPHVYRSPTYRANYG
        + KPLKRG  I+   K    WV   YER+P+FC+ CG IGH   ECE+  D +E +          YG W+R       P ++  P   A+ G
Subjt:  ITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQVDPEEEH---------EYGDWMRNMTTPTSPHVYRSPTYRANYG

A0A5C7H9Y2 CCHC-type domain-containing protein2.1e-3336.93Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        MG N F  +F+N  D++ +++GGPW FDK L+++ E  G  ++++ +FRYV FWI +H+LP+ C++R+    LG L+G  +++D  E        +R++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHEYGDWMRNMTTPTS
         +D+  PLKRGL + +G   +   V I YER+P+FCY CG IGH+  +C     ++      ++G WMR ++   S
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHEYGDWMRNMTTPTS

A0A6J1D765 uncharacterized protein LOC1110179024.7e-3333.03Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G N ++  F++  +K  V+  GPW F+K+L+++  P   ++  +  F +  FWI IH++P  C+S + A  LG  +G  E+++ D  D      +R++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQ---VDPEEEHEYGDWMR------NMTTPTSPHVYRSPTYRANYGWNKG
        K+D++KPL+RG+ ++  +  ++ W  + YE++PDFCY+CG IGH   ECE +   V      +YGDW+R      +++ P     +R   +   +  N G
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQ---VDPEEEHEYGDWMR------NMTTPTSPHVYRSPTYRANYGWNKG

Query:  RGRGRGMRSYDWRQTKLNYRN
        RG GRG    DWR+   N+R+
Subjt:  RGRGRGMRSYDWRQTKLNYRN

A0A6J1DU55 uncharacterized protein LOC1110231351.5e-3435.03Show/hide
Query:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV
        +G+N FL  F    D   V+K GPW FDKALI++++P     IS  EF  V FWIH+ DLPM  +++  A  LGN IG+F DVD +E       +LR++V
Subjt:  MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQV

Query:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECE-----NQVDPEEEHEYGDWMRNMTTPTSPHVYR---SPTYRANYGWNKGR
         +DITKPL+RG+ I +       W+ I YER+PDFCY CG+IGH   +C+      Q D     EYG W+R + +       R   SP    + G +   
Subjt:  KLDITKPLKRGLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECE-----NQVDPEEEHEYGDWMRNMTTPTSPHVYR---SPTYRANYGWNKGR

Query:  GRGRGMRSYDWRQTKLNYRNQKNEYHRSTAGETAGKQAGDIRDDRSKSRTDETGKKLESHSSTVPTANKVSDDKTKGKEKAGMSEEQRQEKTKD
         + RG+      +TK     Q N+       + A +Q GD     +  R   TG  L   S++   +       ++G  K  MS+   + K KD
Subjt:  GRGRGMRSYDWRQTKLNYRNQKNEYHRSTAGETAGKQAGDIRDDRSKSRTDETGKKLESHSSTVPTANKVSDDKTKGKEKAGMSEEQRQEKTKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAACACTTTCCTTTGCAAATTTAGAAACAACAGAGACAAAGAATGGGTGGTTAAAGGAGGACCTTGGAACTTTGACAAGGCTTTAATCATCATAGAGGAACC
AAAGGGAGAGAGCAGAATATCAAATGCAGAGTTCAGGTATGTTAAATTCTGGATTCATATTCACGACTTACCTATGGTGTGCATGAGCAGGAAACGAGCAGAGGCTCTGG
GGAATCTGATAGGCAGCTTCGAAGACGTTGACTGGGATGAAGATGACAGAAGGGGAGAAAACACTCTGAGATTACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGA
GGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAATAACGTATGAAAGAATGCCAGATTTTTGTTATAAATGTGGTATCATCGGACATGTCAAAGA
CGAATGTGAAAATCAGGTCGACCCAGAGGAAGAACATGAATATGGAGATTGGATGAGGAATATGACGACCCCGACAAGCCCACATGTCTACAGAAGCCCAACTTACAGAG
CAAATTATGGATGGAACAAAGGAAGAGGCAGGGGCCGAGGCATGAGATCCTATGATTGGCGGCAAACTAAACTGAACTATAGAAATCAGAAAAATGAATATCATAGGTCT
ACTGCCGGAGAGACTGCCGGAAAACAGGCTGGAGACATCAGGGACGATCGGAGCAAAAGTAGAACAGATGAGACAGGGAAGAAGCTCGAATCCCATAGCAGTACTGTTCC
AACGGCTAATAAAGTGTCAGACGACAAGACAAAAGGAAAAGAAAAGGCAGGAATGTCAGAAGAACAGAGGCAAGAGAAGACTAAGGATAAAGGGAAGCAAATACTAAGTA
GTCAGACAAGGGACATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAACACTTTCCTTTGCAAATTTAGAAACAACAGAGACAAAGAATGGGTGGTTAAAGGAGGACCTTGGAACTTTGACAAGGCTTTAATCATCATAGAGGAACC
AAAGGGAGAGAGCAGAATATCAAATGCAGAGTTCAGGTATGTTAAATTCTGGATTCATATTCACGACTTACCTATGGTGTGCATGAGCAGGAAACGAGCAGAGGCTCTGG
GGAATCTGATAGGCAGCTTCGAAGACGTTGACTGGGATGAAGATGACAGAAGGGGAGAAAACACTCTGAGATTACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGA
GGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAATAACGTATGAAAGAATGCCAGATTTTTGTTATAAATGTGGTATCATCGGACATGTCAAAGA
CGAATGTGAAAATCAGGTCGACCCAGAGGAAGAACATGAATATGGAGATTGGATGAGGAATATGACGACCCCGACAAGCCCACATGTCTACAGAAGCCCAACTTACAGAG
CAAATTATGGATGGAACAAAGGAAGAGGCAGGGGCCGAGGCATGAGATCCTATGATTGGCGGCAAACTAAACTGAACTATAGAAATCAGAAAAATGAATATCATAGGTCT
ACTGCCGGAGAGACTGCCGGAAAACAGGCTGGAGACATCAGGGACGATCGGAGCAAAAGTAGAACAGATGAGACAGGGAAGAAGCTCGAATCCCATAGCAGTACTGTTCC
AACGGCTAATAAAGTGTCAGACGACAAGACAAAAGGAAAAGAAAAGGCAGGAATGTCAGAAGAACAGAGGCAAGAGAAGACTAAGGATAAAGGGAAGCAAATACTAAGTA
GTCAGACAAGGGACATCTGA
Protein sequenceShow/hide protein sequence
MGRNTFLCKFRNNRDKEWVVKGGPWNFDKALIIIEEPKGESRISNAEFRYVKFWIHIHDLPMVCMSRKRAEALGNLIGSFEDVDWDEDDRRGENTLRLQVKLDITKPLKR
GLMIRVGTKAEEAWVKITYERMPDFCYKCGIIGHVKDECENQVDPEEEHEYGDWMRNMTTPTSPHVYRSPTYRANYGWNKGRGRGRGMRSYDWRQTKLNYRNQKNEYHRS
TAGETAGKQAGDIRDDRSKSRTDETGKKLESHSSTVPTANKVSDDKTKGKEKAGMSEEQRQEKTKDKGKQILSSQTRDI