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Spg023080 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023080
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold12:28451201..28457858
RNA-Seq ExpressionSpg023080
SyntenySpg023080
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.2e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]1.9e-2781.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DSINN LHV EGPIT+ KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQE++ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]6.4e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+LEDGT +E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.4e-2772.63Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]6.4e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein1.1e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein9.0e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DSINN LHV EGPIT+ KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQE++ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3BWE8 F15O4.133.1e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+LEDGT +E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein6.9e-2872.63Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH

A0A5D3DRJ1 F15O4.133.1e-2881.18Show/hide
Query:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHV EGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSASQE++ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAATCAATAATCCATTGCATGTAATTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGC
ACAGCAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGATAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGGGGACGAAAACAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAAGCCTTGGTCAACATCCTTTGGCC
GACTCTAGAGAGGAAGTTCCAGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATTCAAGGTATGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACA
ACAACAAAGGGAAGTACGGCCATTCCAAGAAGATGAAGGAATGTTTGACTTAGATGCACATGAAAGACAACTTGGAGGTAGAGGAAATGCAAAGAAGATACAAGAGGCTT
TCACATTGCATGTTCAAAAGCTAGCAAATGCACAGCAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGATAATGGAGTCAAG
ATGGCACGGGAAAAGTTGTGTAGTTTGGAAGATGGCACGGGGGACGAAAACAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAA
TTCTGGAGTGAGTCGTCTTAGGATCTTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAATCAATAATCCATTGCATGTAATTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGC
ACAGCAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGATAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGGGGACGAAAACAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAAGCCTTGGTCAACATCCTTTGGCC
GACTCTAGAGAGGAAGTTCCAGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATTCAAGGTATGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACA
ACAACAAAGGGAAGTACGGCCATTCCAAGAAGATGAAGGAATGTTTGACTTAGATGCACATGAAAGACAACTTGGAGGTAGAGGAAATGCAAAGAAGATACAAGAGGCTT
TCACATTGCATGTTCAAAAGCTAGCAAATGCACAGCAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGATAATGGAGTCAAG
ATGGCACGGGAAAAGTTGTGTAGTTTGGAAGATGGCACGGGGGACGAAAACAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAA
TTCTGGAGTGAGTCGTCTTAGGATCTTTGAGTGA
Protein sequenceShow/hide protein sequence
MDSINNPLHVIEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVKMAREKLCSLEDGTGDENSVQNLFDVQPIHWISFDQSNSGSLGQHPLA
DSREEVPEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASQEDNGVK
MAREKLCSLEDGTGDENSVQNLFDVQPIHWISFDQSNSGVSRLRIFE