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Spg023085 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023085
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:30010861..30012688
RNA-Seq ExpressionSpg023085
SyntenySpg023085
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021854581.1 uncharacterized protein LOC110793955 [Spinacia oleracea]2.2e-0933.59Show/hide
Query:  EKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDS
        ++   +LW  WN+RN  + +N+D     +   VN  ++E+ K      +S    N   + S  S  +W+PPP+G  K+N DAS +E     GLG   RDS
Subjt:  EKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDS

Query:  TGSPICGGLKRINSSWSIKMLEMKAILEGLK
         G+ I  G +R+   W  ++ E KAIL  +K
Subjt:  TGSPICGGLKRINSSWSIKMLEMKAILEGLK

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.5e-1032.9Show/hide
Query:  LGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRA----VNANIKE-----EKKRVSANLFSLSCLNPSGSESLSS-HASWEPPPAGVWKLNVDASR
        L  E++  + ++ W +W  RN+SI   +  D + L R+    +N+NI +     + +R   N   L    P G E+L+     W  PP   WKLN DAS 
Subjt:  LGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRA----VNANIKE-----EKKRVSANLFSLSCLNPSGSESLSS-HASWEPPPAGVWKLNVDASR

Query:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLK--SLQSKS
        SE  +  G+GWIL D  G  +  G  +I     I  LE+  I+ GL+  ++QS+S
Subjt:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLK--SLQSKS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.3e-1026.97Show/hide
Query:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDF--------KYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASR
        +  G E+  ++ ++ W +W  RN+SI     P+         +Y+  +   N   + K  + +L  +  +        ++ A W+PP +  WKLN +A+ 
Subjt:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDF--------KYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASR

Query:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK
           + T G+GWILRD  G  I    + I +  +I  LE+ AI EGL++++ +
Subjt:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]6.3e-0927.78Show/hide
Query:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG
        +  G E+  ++ ++   +W  RN+SI      + + +  A++  I     + +         +P      ++ A W+PP +  WKLN DA+    + T G
Subjt:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG

Query:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK
        +GWILRD  G  I  G + I +  +I  LE+ AI EGL++++ +
Subjt:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.4e-1329.73Show/hide
Query:  MEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQT
        M +    EDL+   +  W +WN RN  I   +   F  + + +   + E   +   +L  L        ++L++   WEPPP  +W LN DAS S+ +  
Subjt:  MEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQT

Query:  SGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI
         G+GWI+R   G  +  G + + +  ++K+LE  AILEGL++L +  +
Subjt:  SGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.6e-1026.97Show/hide
Query:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDF--------KYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASR
        +  G E+  ++ ++ W +W  RN+SI     P+         +Y+  +   N   + K  + +L  +  +        ++ A W+PP +  WKLN +A+ 
Subjt:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDF--------KYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASR

Query:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK
           + T G+GWILRD  G  I    + I +  +I  LE+ AI EGL++++ +
Subjt:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK

A0A6J1CQG0 uncharacterized protein LOC1110132167.2e-1132.9Show/hide
Query:  LGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRA----VNANIKE-----EKKRVSANLFSLSCLNPSGSESLSS-HASWEPPPAGVWKLNVDASR
        L  E++  + ++ W +W  RN+SI   +  D + L R+    +N+NI +     + +R   N   L    P G E+L+     W  PP   WKLN DAS 
Subjt:  LGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRA----VNANIKE-----EKKRVSANLFSLSCLNPSGSESLSS-HASWEPPPAGVWKLNVDASR

Query:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLK--SLQSKS
        SE  +  G+GWIL D  G  +  G  +I     I  LE+  I+ GL+  ++QS+S
Subjt:  SEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLK--SLQSKS

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.0e-0927.78Show/hide
Query:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG
        +  G E+  ++ ++   +W  RN+SI      + + +  A++  I     + +         +P      ++ A W+PP +  WKLN DA+    + T G
Subjt:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG

Query:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK
        +GWILRD  G  I  G + I +  +I  LE+ AI EGL++++ +
Subjt:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK

A0A6J1DNV9 uncharacterized protein LOC1110224034.5e-1329.73Show/hide
Query:  MEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQT
        M +    EDL+   +  W +WN RN  I   +   F  + + +   + E   +   +L  L        ++L++   WEPPP  +W LN DAS S+ +  
Subjt:  MEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQT

Query:  SGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI
         G+GWI+R   G  +  G + + +  ++K+LE  AILEGL++L +  +
Subjt:  SGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.0e-0927.78Show/hide
Query:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG
        +  G E+  ++ ++   +W  RN+SI      + + +  A++  I     + +         +P      ++ A W+PP +  WKLN DA+    + T G
Subjt:  ENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSG

Query:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK
        +GWILRD  G  I  G + I +  +I  LE+ AI EGL++++ +
Subjt:  LGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein5.3e-0629.51Show/hide
Query:  VLWSLWNQRNQSI--QSNQDPDFKY------LTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWIL
        ++W LW  RN  +  Q  Q PD++        T  +NAN   E   V          NP  +    S + W PPP G  K N D+  ++ S  +  GW +
Subjt:  VLWSLWNQRNQSI--QSNQDPDFKY------LTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWIL

Query:  RDSTGS-PICGGLKRINSSWSI
        R+  G   +CG  K  +S+ S+
Subjt:  RDSTGS-PICGGLKRINSSWSI

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0624.41Show/hide
Query:  VLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGSPI
        ++W +W   N  + ++    F+        + KE       N       N + +   S +  W PP     K N DAS  E +  SGLGWILR+S G+ I
Subjt:  VLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGSPI

Query:  CGGLKRINSSWSIKMLEMKAILEGLKS
          G+ +     + +  E   ++  +++
Subjt:  CGGLKRINSSWSIKMLEMKAILEGLKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAAATCTCGGAACTGAAGATCTGGAGAAAGCGACCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGTCGAATCAAGATCCCGATTTCAA
ATATCTAACAAGGGCGGTTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTCAGCCTTTCGTGTCTCAACCCCTCAGGATCGGAGAGCCTCTCGA
GTCATGCATCGTGGGAGCCGCCCCCAGCAGGTGTGTGGAAGCTTAACGTGGATGCTTCTCGGTCGGAAATGTCCCAAACGAGCGGTCTCGGGTGGATTTTGCGTGACTCT
ACAGGATCTCCAATCTGTGGAGGATTGAAGAGGATCAACTCAAGCTGGTCCATCAAAATGCTGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACAGTCCAAGTC
GATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAAATCTCGGAACTGAAGATCTGGAGAAAGCGACCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGTCGAATCAAGATCCCGATTTCAA
ATATCTAACAAGGGCGGTTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTCAGCCTTTCGTGTCTCAACCCCTCAGGATCGGAGAGCCTCTCGA
GTCATGCATCGTGGGAGCCGCCCCCAGCAGGTGTGTGGAAGCTTAACGTGGATGCTTCTCGGTCGGAAATGTCCCAAACGAGCGGTCTCGGGTGGATTTTGCGTGACTCT
ACAGGATCTCCAATCTGTGGAGGATTGAAGAGGATCAACTCAAGCTGGTCCATCAAAATGCTGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACAGTCCAAGTC
GATTTGA
Protein sequenceShow/hide protein sequence
MEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDS
TGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI