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Spg023103 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023103
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:29102412..29104281
RNA-Seq ExpressionSpg023103
SyntenySpg023103
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1463.41Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELP+P+ LPTSAESSRS+SSTW+ELY ESV++
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.0e-2058.2Show/hide
Query:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------
        V K NQKLYL   +W R     + TG +      SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          
Subjt:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------

Query:  VEIELPMPNTLPTSAESSRSSS
        VEIEL +P+TLPTSAESS S+S
Subjt:  VEIELPMPNTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.0e-2058.2Show/hide
Query:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------
        V K NQKLYL   +W R     + TG +      SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          
Subjt:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------

Query:  VEIELPMPNTLPTSAESSRSSS
        VEIEL +P+TLPTSAESS S+S
Subjt:  VEIELPMPNTLPTSAESSRSSS

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]4.1e-1466.67Show/hide
Query:  YRVHTGYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YRVHT YISLLTLSVLRDN+ ++            SAGR PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTGYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1463.41Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELP+P+ LPTSAESSRS+SSTW+ELY ESV++
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase9.0e-1563.41Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELP+P+ LPTSAESSRS+SSTW+ELY ESV++
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7VGQ5 Uncharacterized protein1.4e-2058.2Show/hide
Query:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------
        V K NQKLYL   +W R     + TG +      SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          
Subjt:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------

Query:  VEIELPMPNTLPTSAESSRSSS
        VEIEL +P+TLPTSAESS S+S
Subjt:  VEIELPMPNTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein1.4e-2058.2Show/hide
Query:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------
        V K NQKLYL   +W R     + TG +      SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          
Subjt:  VYKLNQKLYLPEAIWYR-----VHTGYI------SLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------

Query:  VEIELPMPNTLPTSAESSRSSS
        VEIEL +P+TLPTSAESS S+S
Subjt:  VEIELPMPNTLPTSAESSRSSS

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein2.0e-1466.67Show/hide
Query:  YRVHTGYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YRVHT YISLLTLSVLRDN+ ++            SAGR PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTGYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5D3BTP3 Reverse transcriptase9.0e-1563.41Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELP+P+ LPTSAESSRS+SSTW+ELY ESV++
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPMPNTLPTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACCAGGAGGATCTCTGGTATTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGCCCGAGGCTATATGGTACCGTGTGCACAC
AGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGG
CGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGATGCCTAATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACCTGGGTG
GAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACCAGGAGGATCTCTGGTATTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGCCCGAGGCTATATGGTACCGTGTGCACAC
AGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGG
CGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGATGCCTAATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACCTGGGTG
GAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTCTAA
Protein sequenceShow/hide protein sequence
MQTRRISGILWCFEHSGVYKLNQKLYLPEAIWYRVHTGYISLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPMPNTLPTSAESSRSSSSTWV
ELYIESVYIVNVF