; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023106 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023106
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCytochrome b559 subunit alpha
Genome locationscaffold12:31198423..31200902
RNA-Seq ExpressionSpg023106
SyntenySpg023106
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR006216 - Photosystem II cytochrome b559, conserved site
IPR006217 - Photosystem II cytochrome b559, alpha subunit
IPR013081 - Photosystem II cytochrome b559, N-terminal
IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region
IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS73280.1 cytochrome b559 subunit alpha, partial [Genlisea aurea]2.7e-2264.29Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPLA---NTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++  RF  +  LA     L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPLA---NTLVLQGLTVP

KAF8046510.1 hypothetical protein N665_3653s0014 [Sinapis alba]3.5e-2252.59Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVPML
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++  RF  +  L      L + GL VP  
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVPML

Query:  AATNQALPSCSIFLFLYSVSVGESN-GLKKTTRLW
          T   L S S    +   +  E N  L +T+  W
Subjt:  AATNQALPSCSIFLFLYSVSVGESN-GLKKTTRLW

KAF8649256.1 hypothetical protein HU200_064388 [Digitaria exilis]3.5e-2263.27Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RF  +  L      L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP

KQJ84944.1 hypothetical protein BRADI_5g23871v3 [Brachypodium distachyon]2.7e-2263.27Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RF  +  L      L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP

YP_009384002.1 photosystem II cytochrome b559 alpha subunit [Kerriochloa siamensis]1.6e-2269.88Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RFY +  L
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL

TrEMBL top hitse value%identityAlignment
A0A0Q3K1R6 Cytochrome b559 subunit alpha1.3e-2263.27Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RF  +  L      L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP

A0A1Y0ABW1 Cytochrome b559 subunit alpha7.5e-2369.88Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RFY +  L
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL

A0A291F427 Cytochrome b559 subunit alpha1.7e-2298.18Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

A0A368PGM2 Cytochrome b559 subunit alpha1.7e-2263.27Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++ +RF  +  L      L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPL---ANTLVLQGLTVP

S8D1L1 Cytochrome b559 subunit alpha (Fragment)1.3e-2264.29Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPLA---NTLVLQGLTVP
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY             G+ ++  RF  +  LA     L + GL VP
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPLA---NTLVLQGLTVP

SwissProt top hitse value%identityAlignment
A1EA25 Cytochrome b559 subunit alpha5.9e-2596.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

P56779 Cytochrome b559 subunit alpha5.9e-2596.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

P59702 Cytochrome b559 subunit alpha5.9e-2596.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

Q3V518 Cytochrome b559 subunit alpha5.9e-2596.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

Q70XY9 Cytochrome b559 subunit alpha5.9e-2596.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY

Arabidopsis top hitse value%identityAlignment
ATCG00580.1 photosystem II reaction center protein E4.2e-2696.36Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLF+STGLA+DVFGSPRPNEY
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGG
TTATTCATCAGCACGGGTTTAGCTTTCGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTGCTTTATAGTTCTTGACATGGTAGTAAGATTTGAGTTTGGTCTT
GTCATGTTGTTGGAGAGATTTTATGACGTTGTTCCACTGGCAAACACCTTGGTCCTTCAGGGCCTCACGGTGCCGATGCTTGCCGCCACAAACCAGGCTCTGCCA
TCTTGCTCTATTTTTTTGTTTCTTTACTCTGTTTCTGTGGGTGAATCGAATGGACTAAAGAAGACGACGAGATTGTGGGCTTGTGGGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGG
TTATTCATCAGCACGGGTTTAGCTTTCGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTGCTTTATAGTTCTTGACATGGTAGTAAGATTTGAGTTTGGTCTT
GTCATGTTGTTGGAGAGATTTTATGACGTTGTTCCACTGGCAAACACCTTGGTCCTTCAGGGCCTCACGGTGCCGATGCTTGCCGCCACAAACCAGGCTCTGCCA
TCTTGCTCTATTTTTTTGTTTCTTTACTCTGTTTCTGTGGGTGAATCGAATGGACTAAAGAAGACGACGAGATTGTGGGCTTGTGGGTATTAG
Protein sequenceShow/hide protein sequence
MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFISTGLAFDVFGSPRPNEYCFIVLDMVVRFEFGLVMLLERFYDVVPLANTLVLQGLTVPMLAATNQALP
SCSIFLFLYSVSVGESNGLKKTTRLWACGY