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Spg023112 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023112
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:29609928..29614999
RNA-Seq ExpressionSpg023112
SyntenySpg023112
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-1553.33Show/hide
Query:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF
        PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGVT 
Subjt:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF

Query:  ALNVS
        + +VS
Subjt:  ALNVS

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.5e-1665.43Show/hide
Query:  LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNAR
        L TLSVLRDND VVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGGPGGGVTF +   +A+
Subjt:  LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNAR

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.2e-1657.58Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV
        ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-1553.33Show/hide
Query:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF
        PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGVT 
Subjt:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF

Query:  ALNVS
        + +VS
Subjt:  ALNVS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.2e-1657.58Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV
        ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.9e-1553.33Show/hide
Query:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF
        PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGVT 
Subjt:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF

Query:  ALNVS
        + +VS
Subjt:  ALNVS

A0A5A7VMG9 Reverse transcriptase3.5e-1657.58Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV
        ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.7e-1665.43Show/hide
Query:  LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNAR
        L TLSVLRDND VVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGGPGGGVTF +   +A+
Subjt:  LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNAR

A0A5D3DR18 Gag/pol protein2.9e-1553.33Show/hide
Query:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF
        PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLHAIFR K AGGPGGGVT 
Subjt:  PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTF

Query:  ALNVS
        + +VS
Subjt:  ALNVS

A0A5D3DX39 Reverse transcriptase3.5e-1657.58Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV
        ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTCGAGGACCTATTCGAGCACTAGAATTGAAGAACTGCTCAAGGAACTGTTCGAGCAAGAAAGAGAAGATGAGGAGCTACATGCTCCAATTGACAAAGAGGAGGT
CCAGGAGATCACCGTGGACCAAATGCCCAAGAAAAGGGGCAGAGATGACGAAGATGAGGCCGAGGGGAGGCAAAAGAAGAGGAAGATTACCAATTCCCTCAGGAGGCCTA
GCACACGGGGAGCGACTTCTGTGCTTCCTCATGTCCAGACACCACCACCACCATCGCCTGCAAAGAGAGAATCCCCCACTCCTCGGGTAAAGAAAGCGTCAATCACAAAA
TTGAGGGTGGAACGACAGGTGGAGCCACACGTAGAGACTCAGGCCCGCCTCGCTTTTATGAAAAAGAGGGCCTTGATGTGTGATGGAGCACAGGATTTTCGAGCAAAGCA
GGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGTATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACA
ACGATGTTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCG
TTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTCTCAATGTATCCAATGCTCGAATACC
TTCAAAGATAGACATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTCGAGGACCTATTCGAGCACTAGAATTGAAGAACTGCTCAAGGAACTGTTCGAGCAAGAAAGAGAAGATGAGGAGCTACATGCTCCAATTGACAAAGAGGAGGT
CCAGGAGATCACCGTGGACCAAATGCCCAAGAAAAGGGGCAGAGATGACGAAGATGAGGCCGAGGGGAGGCAAAAGAAGAGGAAGATTACCAATTCCCTCAGGAGGCCTA
GCACACGGGGAGCGACTTCTGTGCTTCCTCATGTCCAGACACCACCACCACCATCGCCTGCAAAGAGAGAATCCCCCACTCCTCGGGTAAAGAAAGCGTCAATCACAAAA
TTGAGGGTGGAACGACAGGTGGAGCCACACGTAGAGACTCAGGCCCGCCTCGCTTTTATGAAAAAGAGGGCCTTGATGTGTGATGGAGCACAGGATTTTCGAGCAAAGCA
GGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGTATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACA
ACGATGTTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCG
TTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTCTCAATGTATCCAATGCTCGAATACC
TTCAAAGATAGACATTTAA
Protein sequenceShow/hide protein sequence
MCSRTYSSTRIEELLKELFEQEREDEELHAPIDKEEVQEITVDQMPKKRGRDDEDEAEGRQKKRKITNSLRRPSTRGATSVLPHVQTPPPPSPAKRESPTPRVKKASITK
LRVERQVEPHVETQARLAFMKKRALMCDGAQDFRAKQEDLWFSLVFRVFWGVQVESEALFGYIPLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVS
LEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNARIPSKIDI